TkA01G358040 | RubberDandelionOmics

Gene overview

TkA01G358040

Reference: TK1151 Chr: Chr01 Coordinates: 88938101-88939666 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

693 bp · TkA01G358040|TK1151|cDNA

ATGGCTTCAAAAGCGAAGTTCAAAATTGTTGACTGTAATGGAAATTTCAGAACCACTTTGGCTGAAATTTTCTTCTTGGAGTACCGAAAGGTTGATTTGAGGGAAAACGAGATTCTTTATTCGGTTCTTTTTCCATGGACAAAAAGGTTTGAGTTTGTGAAAGAATATAAACAGGCTCATAGAAGAAAAGACGATATTGCCCTTGTGAATGCTGGAATTCGTGTTTTTCTTAAACCATGGAGTAATGAAACATTGCAAAA...

CDS

Download CDS FASTA

693 bp · TkA01G358040|TK1151|CDS

ATGGCTTCAAAAGCGAAGTTCAAAATTGTTGACTGTAATGGAAATTTCAGAACCACTTTGGCTGAAATTTTCTTCTTGGAGTACCGAAAGGTTGATTTGAGGGAAAACGAGATTCTTTATTCGGTTCTTTTTCCATGGACAAAAAGGTTTGAGTTTGTGAAAGAATATAAACAGGCTCATAGAAGAAAAGACGATATTGCCCTTGTGAATGCTGGAATTCGTGTTTTTCTTAAACCATGGAGTAATGAAACATTGCAAAA...

Protein

Download Protein FASTA

230 aa · TkA01G358040|TK1151|PROTEIN

MASKAKFKIVDCNGNFRTTLAEIFFLEYRKVDLRENEILYSVLFPWTKRFEFVKEYKQAHRRKDDIALVNAGIRVFLKPWSNETLQNDMEIMKQYVIMNGQEFSKESIPESHLSAIDSFNRMSYDTPMPPGGLHAAMILSKKPHARLLSVDDSGARSSRGFAVIFFSKDIPGDNATGPIVEDEQIFAYDIVTCVGQELLLQTLMKIRKVMNNSAGNKKIGKKKTKKPQLN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G358040`
TK1151 ID	TkA01G358040
OH-1004 ID	LXL04_013002
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	56.700
Protein coverage (%)	TK1151 85.217 / OH-1004 16.510 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G358040

Location Chr01:88938101-88939666 (+)

Description Similar to XDH1: Xanthine dehydrogenase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34890`	Key enzyme involved in purine catabolism.	Tandem orientation of duplicated xanthine dehydrogenase genes from Arabidopsis thaliana: differential gene expression and enzyme activities.2004 · DOI: 10.1074/jbc.m312929200 The plant Mo-hydroxylases aldehyde oxidase and xanthine dehydrogenase have distinct reactive oxygen species signatures and are induced by drought and abscisic acid.2005 · DOI: 10.1111/j.1365-313x.2005.02422.x The RNAi-mediated silencing of xanthine dehydrogenase impairs growth and fertility and accelerates leaf senescence in transgenic Arabidopsis plants.2007 · DOI: 10.1093/pcp/pcm119 A critical role for ureides in dark and senescence-induced purine remobilization is unmasked in the Atxdh1 Arabidopsis mutant.2008 · DOI: 10.1111/j.1365-313x.2008.03440.x Xanthine dehydrogenase AtXDH1 from Arabidopsis thaliana is a potent producer of superoxide anions via its NADH oxidase activity.2010 · DOI: 10.1007/s11103-009-9570-2
`At4g34900`	Key enzyme involved in purine catabolism.	The RNAi-mediated silencing of xanthine dehydrogenase impairs growth and fertility and accelerates leaf senescence in transgenic Arabidopsis plants.2007 · DOI: 10.1093/pcp/pcm119

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0429800`	Key enzyme involved in purine catabolism.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013002 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000302 response to reactive oxygen species Biological Process

GO:0006145 purine nucleobase catabolic process Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0042554 superoxide anion generation Biological Process

GO:0046110 xanthine metabolic process Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0004854 xanthine dehydrogenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016491 oxidoreductase activity Molecular Function

GO:0051537 2 iron, 2 sulfur cluster binding Molecular Function

GO:0071949 FAD binding Molecular Function

KEGG gene cross-reference

ath:AT4G34890

ath:AT4G34900

dosa:Os03g0429800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.409

Rank 1 · TkA01G358040 · TK1151

Nucleus0.245

Rank 2 · TkA01G358040 · TK1151

Mitochondrion0.189

Rank 3 · TkA01G358040 · TK1151

Peroxisome0.096

Rank 4 · TkA01G358040 · TK1151

Extracellular0.045

Rank 5 · TkA01G358040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00941FAD_binding_51-46 aa

PF03450CO_deh_flav_C15-27 aa

PF03450CO_deh_flav_C55-79 aa

PF03450CO_deh_flav_C78-96 aa

PF01315Ald_Xan_dh_C125-197 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G358040	`PF00941`	FAD_binding_5	1	46	0.0014	19.2
TkA01G358040	`PF03450`	CO_deh_flav_C	15	27	0.00021	22.1
TkA01G358040	`PF03450`	CO_deh_flav_C	55	79	0.00021	22.1
TkA01G358040	`PF03450`	CO_deh_flav_C	78	96	0.00021	22.1
TkA01G358040	`PF01315`	Ald_Xan_dh_C	125	197	1.4e-12	48.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GUQ8`	Arabidopsis thaliana	sp\|Q8GUQ8\|XDH1_ARATH Xanthine dehydrogenase 1	38.300%	Swiss-Prot	Medium
`F4JLI5`	Arabidopsis thaliana	sp\|F4JLI5\|XDH2_ARATH Xanthine dehydrogenase 2	37.900%	Swiss-Prot	Medium
`Q6AUV1`	Oryza sativa subsp. japonica	sp\|Q6AUV1\|XDH_ORYSJ Xanthine dehydrogenase	37.900%	Swiss-Prot	Medium

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