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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G351140
Reference: TK1151 Chr: Chr01 Coordinates: 87190448-87191736 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

678 bp · TkA01G351140|TK1151|cDNA

ATGGGACTTGCAGGTGTAGAAGCTCAGGTTGTGACCATTGAACAAGCAAGTGTTGAAGCTAAGGAATCTGCAGTACGCGAGGTTGCGAAGCTCTTGCCGCTTTCTGAGCTTTTGCTATCCATTTCTTCAATCAAGGCAGTATTTCTTCCATTTTTTCAGGCAACCGATGCACAACTTAGCACTATGGTTGCTGAACAGGTTAAACAAGCACAAGCTGGTCTAAAAGCACTTGGTTCATCCGAAGAGAATGTAAATCAACT...

CDS

Download CDS FASTA

678 bp · TkA01G351140|TK1151|CDS

ATGGGACTTGCAGGTGTAGAAGCTCAGGTTGTGACCATTGAACAAGCAAGTGTTGAAGCTAAGGAATCTGCAGTACGCGAGGTTGCGAAGCTCTTGCCGCTTTCTGAGCTTTTGCTATCCATTTCTTCAATCAAGGCAGTATTTCTTCCATTTTTTCAGGCAACCGATGCACAACTTAGCACTATGGTTGCTGAACAGGTTAAACAAGCACAAGCTGGTCTAAAAGCACTTGGTTCATCCGAAGAGAATGTAAATCAACT...

Protein

Download Protein FASTA

225 aa · TkA01G351140|TK1151|PROTEIN

MGLAGVEAQVVTIEQASVEAKESAVREVAKLLPLSELLLSISSIKAVFLPFFQATDAQLSTMVAEQVKQAQAGLKALGSSEENVNQLRQNFVNIERLCQECQTLIENHDQIKLLSNARNNLNTTLKDVEGMMSISSEAAAAHDSLSDDKELINTYDRLTALDGKRRFALAAASTHEEEVGRLRLYFEEVDRTWETFEQTLWSHISNFFQLAKESPQTLVRALRYV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G351140
TK1151 IDTkA01G351140
OH-1004 IDLXL04_002566
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)84.000
Protein coverage (%)TK1151 97.778 / OH-1004 58.716
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G351140
LocationChr01:87190448-87191736 (-)
DescriptionSimilar to SEC6: Exocyst complex component SEC6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71820 Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane during regulated or polarized secretion.
The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.2010 · DOI: 10.1105/tpc.110.074351
Visualization of the exocyst complex dynamics at the plasma membrane of Arabidopsis thaliana.2013 · DOI: 10.1091/mbc.e12-06-0492
Regulation of cytokinesis by exocyst subunit SEC6 and KEULE in Arabidopsis thaliana.2013 · DOI: 10.1093/mp/sst082

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002566 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005975 carbohydrate metabolic process Biological Process
GO:0006099 tricarboxylic acid cycle Biological Process
GO:0006101 citrate metabolic process Biological Process
GO:0006887 exocytosis Biological Process
GO:0051601 exocyst localization Biological Process
GO:0060321 acceptance of pollen Biological Process
GO:0000145 exocyst Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G71820
ath:AT2G44350
sot:102595372
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.562
Rank 1 · TkA01G351140 · TK1151
Golgi apparatus0.314
Rank 2 · TkA01G351140 · TK1151
Nucleus0.167
Rank 3 · TkA01G351140 · TK1151
Endoplasmic reticulum0.120
Rank 4 · TkA01G351140 · TK1151
Lysosome / Vacuole0.105
Rank 5 · TkA01G351140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12325TMF_TATA_bd19-30 aa
PF04100Vps53_N23-127 aa
PF07200Mod_r34-114 aa
PF08649DASH_Dad152-97 aa
PF28420CCDC12256-159 aa
PF05267DUF72557-154 aa
PF12325TMF_TATA_bd57-99 aa
PF06046Sec658-102 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G351140PF12325TMF_TATA_bd19303.58.5
TkA01G351140PF04100Vps53_N231270.0003320.5
TkA01G351140PF07200Mod_r341140.02815.1
TkA01G351140PF08649DASH_Dad152978.47.4
TkA01G351140PF28420CCDC122561590.01216.1
TkA01G351140PF05267DUF725571540.03214.9
TkA01G351140PF12325TMF_TATA_bd57993.58.5
TkA01G351140PF06046Sec6581021.8e-0627.5
TkA01G351140PF03908Sec20601070.006517.1
TkA01G351140PF06133Com_YlbF681330.312.2
TkA01G351140PF13373Dsc3_C741070.0215.8
TkA01G351140PF20663COG4_N751460.2812.0
TkA01G351140PF12325TMF_TATA_bd971293.58.5
TkA01G351140PF12579DUF37551111310.1512.4
TkA01G351140PF08649DASH_Dad11161318.47.4
TkA01G351140PF03908Sec201181620.006517.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q94AI6Arabidopsis thalianasp|Q94AI6|SEC6_ARATH Exocyst complex component SEC677.000%Swiss-ProtHigh

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