Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1311 bp · LXL04_002566|LXL04_002566|OH1004|cDNA
ATGCTTCATCACTTCAGCTCCAGCGGAGCTTCATTTATTCGCAATGCCGATCTAAGATGTCATTTGCTTCATCAGGGCTTTACAGAGGTTGCTGATGAACTTGATTATAGGAACGAATTTAGACAGATGACATCGGAAAAAACTCTTTCTATAAACCTTGGTGTAGAAGCTCAGGTTGTGACCATTGAACAAGCAAGTGTTGAAGCTAAGGAATCTGCAGTACGCGAGGTTGCGAAGCTCTTGCCGCTTTCTGAGCTTTT...
1311 bp · LXL04_002566|LXL04_002566|OH1004|CDS
ATGCTTCATCACTTCAGCTCCAGCGGAGCTTCATTTATTCGCAATGCCGATCTAAGATGTCATTTGCTTCATCAGGGCTTTACAGAGGTTGCTGATGAACTTGATTATAGGAACGAATTTAGACAGATGACATCGGAAAAAACTCTTTCTATAAACCTTGGTGTAGAAGCTCAGGTTGTGACCATTGAACAAGCAAGTGTTGAAGCTAAGGAATCTGCAGTACGCGAGGTTGCGAAGCTCTTGCCGCTTTCTGAGCTTTT...
Protein
Download Protein FASTA436 aa · LXL04_002566|LXL04_002566|OH1004|PROTEIN
MLHHFSSSGASFIRNADLRCHLLHQGFTEVADELDYRNEFRQMTSEKTLSINLGVEAQVVTIEQASVEAKESAVREVAKLLPLSELLLSISSIKAEMSIKLTYFFTLNQATDAQLSTMVAEQVEQAQAGLKALGSSEENVNQLRQNFVNIERLCQECQTLIENHDQIKLLSNARNNLNTTLKYASKSADHFLYFISFLLYFFFPFFNKLLKDVEGMMSISSEAAAAHDSLSDDKELINTYDRLTALDGKRRFALAAASTH...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002566 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002566 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:51741606-51744374 (+) | |||||||||
| Description | Similar to SEC6: Exocyst complex component SEC6 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0005975 carbohydrate metabolic process Biological Process GO:0006099 tricarboxylic acid cycle Biological Process GO:0006101 citrate metabolic process Biological Process GO:0006887 exocytosis Biological Process GO:0051601 exocyst localization Biological Process GO:0060321 acceptance of pollen Biological Process GO:0000145 exocyst Cellular Component GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G71820 ath:AT2G44350 sot:102595372 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00285.27Citrate_synt324-363 aaPF00285.27Citrate_synt368-423 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002566 | PF00285.27 | Citrate_synt | 324 | 363 | 1.3e-21 | 77.7 |
| LXL04_002566 | PF00285.27 | Citrate_synt | 368 | 423 | 1.3e-21 | 77.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.