TkA01G351000 | RubberDandelionOmics

Gene overview

TkA01G351000

Reference: TK1151 Chr: Chr01 Coordinates: 87156913-87157909 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

573 bp · TkA01G351000|TK1151|cDNA

ATGGAATCTGATCTTGATGAAGTCATCAAGGTTAACGATGACCTCACCCCTGAACATCATCAATTCTTCCTGTATCAACTCCTTCGCGCTTTGAAATATATACATACAGCTCATGTGTTTCATCACGATCTGAAACCCAAGAACATTCTCGCAAATGCAGATTGCAAATTAAAGATTTGTGATTTTGGTTTAGCGCGTGCTTCATTTGATGATACCCCGTCAGCGGATTACGTGGCCACTAGATGGTATCGCGCTCCTGA...

CDS

Download CDS FASTA

573 bp · TkA01G351000|TK1151|CDS

ATGGAATCTGATCTTGATGAAGTCATCAAGGTTAACGATGACCTCACCCCTGAACATCATCAATTCTTCCTGTATCAACTCCTTCGCGCTTTGAAATATATACATACAGCTCATGTGTTTCATCACGATCTGAAACCCAAGAACATTCTCGCAAATGCAGATTGCAAATTAAAGATTTGTGATTTTGGTTTAGCGCGTGCTTCATTTGATGATACCCCGTCAGCGGATTACGTGGCCACTAGATGGTATCGCGCTCCTGA...

Protein

Download Protein FASTA

190 aa · TkA01G351000|TK1151|PROTEIN

MESDLDEVIKVNDDLTPEHHQFFLYQLLRALKYIHTAHVFHHDLKPKNILANADCKLKICDFGLARASFDDTPSADYVATRWYRAPELCGSFFSKYTSAIDIWSIGCIFAEMLTEIRNDKARRYLNGLPNKVKVPLSNKFPNADPLALRLLEKLLAFDPADRIFAEEISFSKTLYQLFRKLNIFKSSKYI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G351000`
TK1151 ID	TkA01G351000
OH-1004 ID	LXL04_020286
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	84.100
Protein coverage (%)	TK1151 90.000 / OH-1004 22.340 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G351000

Location Chr01:87156913-87157909 (-)

Description Similar to MPK15: Mitogen-activated protein kinase 15

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g73670`	Mitogen-activated protein kinase 15.	No verified direct reference in this release
`At3g18040`	Mitogen-activated protein kinase 9.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0143500`	Mitogen-activated protein kinase 14.	No verified direct reference in this release
`Os01g0643800`	Mitogen-activated protein kinase 16.	No verified direct reference in this release
`Os11g0271100`	Mitogen-activated protein kinase 15.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_020286 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004707 MAP kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G73670

ath:AT3G18040

dosa:Os02g0135200

dosa:Os06g0708000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.565

Rank 1 · TkA01G351000 · TK1151

Nucleus0.341

Rank 2 · TkA01G351000 · TK1151

Mitochondrion0.094

Rank 3 · TkA01G351000 · TK1151

Endoplasmic reticulum0.085

Rank 4 · TkA01G351000 · TK1151

Cell membrane0.078

Rank 5 · TkA01G351000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase3-168 aa

PF06293Kdo3-60 aa

PF07714PK_Tyr_Ser-Thr4-166 aa

PF12330Haspin_kinase24-70 aa

PF14531Kinase-like25-107 aa

PF03109ABC131-67 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G351000	`PF00069`	Pkinase	3	168	3.2e-37	129.1
TkA01G351000	`PF06293`	Kdo	3	60	0.00073	19.7
TkA01G351000	`PF07714`	PK_Tyr_Ser-Thr	4	166	3.9e-17	63.1
TkA01G351000	`PF12330`	Haspin_kinase	24	70	0.021	14.6
TkA01G351000	`PF14531`	Kinase-like	25	107	0.0022	18.0
TkA01G351000	`PF03109`	ABC1	31	67	0.0023	17.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C9U4`	Arabidopsis thaliana	sp\|Q9C9U4\|MPK15_ARATH Mitogen-activated protein kinase 15	67.200%	Swiss-Prot	High
`Q9LV37`	Arabidopsis thaliana	sp\|Q9LV37\|MPK9_ARATH Mitogen-activated protein kinase 9	67.200%	Swiss-Prot	High
`Q75KK8`	Oryza sativa subsp. japonica	sp\|Q75KK8\|MPK14_ORYSJ Mitogen-activated protein kinase 14	67.200%	Swiss-Prot	High
`Q5VP69`	Oryza sativa subsp. japonica	sp\|Q5VP69\|MPK16_ORYSJ Mitogen-activated protein kinase 16	67.200%	Swiss-Prot	High
`Q53N72`	Oryza sativa subsp. japonica	sp\|Q53N72\|MPK15_ORYSJ Mitogen-activated protein kinase 15	66.700%	Swiss-Prot	High

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