TkA01G322990 | RubberDandelionOmics

Gene overview

TkA01G322990

Reference: TK1151 Chr: Chr01 Coordinates: 80318593-80326187 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3894 bp · TkA01G322990|TK1151|cDNA

CTACGATAAAACAAAACCATATTATAAGTTTGTCCTTGAAGTGAAATTATAATTTCTATATTCTTTGTAACAATGTTTGTTGTTTGTACCCTTTGTTAGACCGGTTATGTGGAAAATGAGAAAATTTCCAATTTTCCACATCATCTCCTCTCGCAAAACTGTTTGTTTCTTCCTCCCGACGAAAAGAAAGCTTCTCCTGATAAATACAACAAAAGTTATACATTCATAAACCCTTTTCGATTTCATACTTCTTTCCCATT...

CDS

Download CDS FASTA

3093 bp · TkA01G322990|TK1151|CDS

ATGTTCTTCAGTGGCGATCCTTCCAATCGGAAACGAGTTGATTTAGGCGGCCGTAGCTCAAAGGAAAGAGATAGAAAGAAGCTTTTAGAACAGGCGAAGTTAGAGAGGAATAAAAGATCATTGATACGCCAGCAAAACTCAGCTGCTCTCACAATTCAGAAATGCTTTAGAGGAAGAAAAATTGTGAAACTGGAGCGTGGTACTGCACGAAAGAGATTTTATACCGCTTATGGAAAACACTGTGAAAGAGTAGACAGACA...

Protein

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1030 aa · TkA01G322990|TK1151|PROTEIN

MFFSGDPSNRKRVDLGGRSSKERDRKKLLEQAKLERNKRSLIRQQNSAALTIQKCFRGRKIVKLERGTARKRFYTAYGKHCERVDRHCFGPDSDFLRELLYFLSPQNASDFSTLVETCSLLSQFANDSGDILNLFGGPHYSAEQALVNYRVKKLAYVCIQAVHHNRYKLKDQLLSASLDSNTPTSILLKAASLLIDPKLPWSCKIASYLLHQNIHKIFRDIVITGRESLNSESLAGSVSLVERVLALIIAHTGQGHCACP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G322990`
TK1151 ID	TkA01G322990
OH-1004 ID	LXL04_003633
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G322990

Location Chr01:80318593-80326187 (+)

Description Similar to UPL6: E3 ubiquitin-protein ligase UPL6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17205`	Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003633 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0000209 protein polyubiquitination Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0035519 protein K29-linked ubiquitination Biological Process

GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process

GO:0070936 protein K48-linked ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0061630 ubiquitin protein ligase activity Molecular Function

KEGG gene cross-reference

ath:AT3G17205

hsa:89910

mmu:100763

mmu:117146

xtr:780337

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.637

Rank 1 · TkA01G322990 · TK1151

Nucleus0.323

Rank 2 · TkA01G322990 · TK1151

Golgi apparatus0.084

Rank 3 · TkA01G322990 · TK1151

Endoplasmic reticulum0.074

Rank 4 · TkA01G322990 · TK1151

Mitochondrion0.065

Rank 5 · TkA01G322990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13230GATase_4141-181 aa

PF13230GATase_4535-598 aa

PF00632HECT725-1030 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G322990	`PF13230`	GATase_4	141	181	0.051	13.3
TkA01G322990	`PF13230`	GATase_4	535	598	0.051	13.3
TkA01G322990	`PF00632`	HECT	725	1030	1e-95	321.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RWB8`	Arabidopsis thaliana	sp\|Q8RWB8\|UPL6_ARATH E3 ubiquitin-protein ligase UPL6	66.600%	Swiss-Prot	High

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