LXL04_003633 | RubberDandelionOmics

Gene overview

LXL04_003633

Reference: OH-1004 Chr: Chr01 Coordinates: 89812690-89819254 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3093 bp · LXL04_003633|LXL04_003633|OH1004|cDNA

ATGTTCTTCAGTGGCGATCCTTCCAATCGGAAACGAGTTGATTTAGGCGGCCGTAGCTCAAAGGAAAGAGATAGAAAGAAGCTTTTAGAACAGGCGAAGTTAGAGAGGAATAAAAGATCATTGATACGCCAGCAAAACTCAGCTGCTCTCACAATTCAGAAATGCTTTAGAGGAAGAAAAATTGTGAAACTGGAGCGTGGTACTGCACGAAAGAGATTCTATACTGCTTATGGAAAACACTGTGAAAGAGTAGACAGACA...

CDS

Download CDS FASTA

3093 bp · LXL04_003633|LXL04_003633|OH1004|CDS

ATGTTCTTCAGTGGCGATCCTTCCAATCGGAAACGAGTTGATTTAGGCGGCCGTAGCTCAAAGGAAAGAGATAGAAAGAAGCTTTTAGAACAGGCGAAGTTAGAGAGGAATAAAAGATCATTGATACGCCAGCAAAACTCAGCTGCTCTCACAATTCAGAAATGCTTTAGAGGAAGAAAAATTGTGAAACTGGAGCGTGGTACTGCACGAAAGAGATTCTATACTGCTTATGGAAAACACTGTGAAAGAGTAGACAGACA...

Protein

Download Protein FASTA

1030 aa · LXL04_003633|LXL04_003633|OH1004|PROTEIN

MFFSGDPSNRKRVDLGGRSSKERDRKKLLEQAKLERNKRSLIRQQNSAALTIQKCFRGRKIVKLERGTARKRFYTAYGKHCERVDRHCFGPDSDFLRELLYFLSPQNASDFSTLVEACSLLSQFANDSGDILNLFGGPHYSAEQALVNYRVKKLAYVCIQAVHHNRYKLKDQLLSASLDSNTPTSILLKAASLLIDPKLPWSCKIASYLLHQNIYKIFREIVITGRESLKSESHAGSVSLVERVLALIIAHTGQGHCACP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003633`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003633

Location Chr01:89812690-89819254 (+)

Description Similar to UPL6: E3 ubiquitin-protein ligase UPL6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17205`	Probable E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003633 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000045 autophagosome assembly Biological Process

GO:0000209 protein polyubiquitination Biological Process

GO:0006511 ubiquitin-dependent protein catabolic process Biological Process

GO:0035519 protein K29-linked ubiquitination Biological Process

GO:0046854 phosphatidylinositol phosphate biosynthetic process Biological Process

GO:0070936 protein K48-linked ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0061630 ubiquitin protein ligase activity Molecular Function

KEGG gene cross-reference

ath:AT3G17205

hsa:89910

mmu:100763

mmu:117146

xtr:780337

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.627

Rank 1 · LXL04_003633 · OH-1004

Nucleus0.317

Rank 2 · LXL04_003633 · OH-1004

Golgi apparatus0.089

Rank 3 · LXL04_003633 · OH-1004

Endoplasmic reticulum0.079

Rank 4 · LXL04_003633 · OH-1004

Mitochondrion0.065

Rank 5 · LXL04_003633 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00632.31HECT725-1030 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003633	`PF00632.31`	HECT	725	1030	1e-95	321.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8RWB8`	Arabidopsis thaliana	E3 ubiquitin-protein ligase UPL6	66.634%	Swiss-Prot	strong database homology

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