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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G227830
Reference: TK1151 Chr: Chr01 Coordinates: 57915925-57918508 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2052 bp · TkA01G227830|TK1151|cDNA

ATGCACGCTACTGATGGAACTCATGCTACCACATCGACAAAAGACGATAACCCTTCTGATAAAATTCAATGTAATCCTGCTCTGGTATTTGCCCGATCTTTTGCTCAAACTGTTGAATCAAAGAAGCATACTATTGATTGTAAAATCAAATTCATCCCGAAAAACACAAACAAGAAGCATGGTGATGTTGAAATGCCGATCCCAAACATGATCTCTGGTAGCAGTCCATACCAAACTACTCTTATTGGCTTCTTCCTTGA...

CDS

Download CDS FASTA

2052 bp · TkA01G227830|TK1151|CDS

ATGCACGCTACTGATGGAACTCATGCTACCACATCGACAAAAGACGATAACCCTTCTGATAAAATTCAATGTAATCCTGCTCTGGTATTTGCCCGATCTTTTGCTCAAACTGTTGAATCAAAGAAGCATACTATTGATTGTAAAATCAAATTCATCCCGAAAAACACAAACAAGAAGCATGGTGATGTTGAAATGCCGATCCCAAACATGATCTCTGGTAGCAGTCCATACCAAACTACTCTTATTGGCTTCTTCCTTGA...

Protein

Download Protein FASTA

683 aa · TkA01G227830|TK1151|PROTEIN

MHATDGTHATTSTKDDNPSDKIQCNPALVFARSFAQTVESKKHTIDCKIKFIPKNTNKKHGDVEMPIPNMISGSSPYQTTLIGFFLDKKLAFPTVKYFVNRMWKQFGIEDLMVNEQGYYFFRFSSVQGMNDVIENEMDMVPVWVKVYNVPLEYWNETGIAHISNELGRPIMMDKVTANMCEHHWGRPSFMRILVEMSAEVAWLSSLNVTSIDLDTGEKKVSKCNVESKTNQVNKTGNENAGKKTFKITDQEGFVTIVRNQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G227830
TK1151 IDTkA01G227830
OH-1004 IDLXL04_039284
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)44.900
Protein coverage (%)TK1151 96.925 / OH-1004 7.270
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G227830
LocationChr01:57915925-57918508 (+)
DescriptionSimilar to LINE-1 retrotransposable element ORF2 protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039284 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0032197 retrotransposition Biological Process
GO:0090304 nucleic acid metabolic process Biological Process
GO:0003723 RNA binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0009036 type II site-specific deoxyribonuclease activity Molecular Function
GO:0046872 metal ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.711
Rank 1 · TkA01G227830 · TK1151
Nucleus0.277
Rank 2 · TkA01G227830 · TK1151
Cell membrane0.084
Rank 3 · TkA01G227830 · TK1151
Mitochondrion0.042
Rank 4 · TkA01G227830 · TK1151
Endoplasmic reticulum0.039
Rank 5 · TkA01G227830 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14111DUF428379-135 aa
PF05377FlaC_arch131-137 aa
PF14529Exo_endo_phos_2254-304 aa
PF21121Nup49_C259-296 aa
PF21680GIDA_C_1st261-311 aa
PF14712Snapin_Pallidin288-342 aa
PF05377FlaC_arch294-314 aa
PF21121Nup49_C301-342 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G227830PF14111DUF4283791350.000420.8
TkA01G227830PF05377FlaC_arch1311377.77.8
TkA01G227830PF14529Exo_endo_phos_22543040.07213.7
TkA01G227830PF21121Nup49_C2592961.410.2
TkA01G227830PF21680GIDA_C_1st2613110.1813.3
TkA01G227830PF14712Snapin_Pallidin2883420.3712.0
TkA01G227830PF05377FlaC_arch2943147.77.8
TkA01G227830PF21121Nup49_C3013421.410.2
TkA01G227830PF14529Exo_endo_phos_23023410.07213.7
TkA01G227830PF21680GIDA_C_1st3023710.1813.3
TkA01G227830PF14529Exo_endo_phos_23944160.07213.7
TkA01G227830PF14529Exo_endo_phos_24515740.07213.7
TkA01G227830PF14111DUF42836006120.000420.8
TkA01G227830PF05377FlaC_arch6186517.77.8
TkA01G227830PF14712Snapin_Pallidin6226610.3712.0
TkA01G227830PF28337NNF2_middle6246640.0215.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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