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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G197360
Reference: TK1151 Chr: Chr01 Coordinates: 50313777-50317427 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1917 bp · TkA01G197360|TK1151|cDNA

AAAAGGCCGGTCTTTGGATGATGAAGCAGCCTGCCCCCACTTGTGAAAATGCAATTATTATAATAATTCATCCACGAGATTGTTGAAAAAAGGAAAACCCCTCAAAGATTCGTCTTCGATTTTGGAGAGAGAAACCGCTTAGATCATTCAGATAGAATTATTCATCGTTGAAAGGGTGAAGAATCAACTCATCCCATCTGAATCTGCTGCGAAAGTAACAGAAGAAACGACGACGATTTCTCCAGGGTTTCTCATCTGGT...

CDS

Download CDS FASTA

1314 bp · TkA01G197360|TK1151|CDS

ATGCCTGATAACGATGTTGAGGGAATCGATTACATGGCAGATGAGGTGGACATTTTGGACTTTGTGATGGAAGATGATGAGGTCAATGGTGGTGGAGCTCAGTTTGCTGATGATTATGACATGGTGACAGATACATCTTCAGCTCAAGCAAGAAGAGGCAAAGACATTCAAGGCATTCCATGGGAAAGACTGAATATAACAAGAGAAAGTTACAGACAAACAAGGCTGGAACAGTACAGAAACTATGAAAACATTCCTTT...

Protein

Download Protein FASTA

437 aa · TkA01G197360|TK1151|PROTEIN

MPDNDVEGIDYMADEVDILDFVMEDDEVNGGGAQFADDYDMVTDTSSAQARRGKDIQGIPWERLNITRESYRQTRLEQYRNYENIPLSGDAVDKKCKQKQKGGNYYEFFHNTRLVKPTILHFQLRNLVWATSKHDVYLMSNYSIMHWSSLSSNLTEILNFSGHVAPTEKHAGSLLEGFTQTQISTLSVKDDFLVAGGFQGELACKRLDKQGVSFCTRTTYDDNAITNAVEIYDSSSGGKHFMASNNDGGVREYDMDRFQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G197360
TK1151 IDTkA01G197360
OH-1004 IDLXL04_004145
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 93.978
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G197360
LocationChr01:50313777-50317427 (-)
DescriptionSimilar to SPBC2A9.03: Uncharacterized WD repeat-containing protein C2A9.03 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004145 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005829 cytosol Cellular Component
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ana:alr2800
spo:2540276
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.647
Rank 1 · TkA01G197360 · TK1151
Cytoplasm0.484
Rank 2 · TkA01G197360 · TK1151
Lysosome / Vacuole0.042
Rank 3 · TkA01G197360 · TK1151
Mitochondrion0.032
Rank 4 · TkA01G197360 · TK1151
Cell membrane0.032
Rank 5 · TkA01G197360 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03228Adeno_VII73-138 aa
PF17005WD40_like144-222 aa
PF24807WD40_CDC20-Fz157-260 aa
PF30552CFAP251_N165-203 aa
PF24805EIF3I179-286 aa
PF25047Beta-prop_TEP1_2nd180-238 aa
PF23775Beta-prop_RIG_2nd180-221 aa
PF23383Beta-prop_IFT140_1st180-212 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G197360PF03228Adeno_VII731380.1313.5
TkA01G197360PF17005WD40_like1442220.01215.8
TkA01G197360PF24807WD40_CDC20-Fz1572601.5e-1041.6
TkA01G197360PF30552CFAP251_N1652030.0008219.3
TkA01G197360PF24805EIF3I1792861.3e-0938.3
TkA01G197360PF25047Beta-prop_TEP1_2nd1802380.000221.3
TkA01G197360PF23775Beta-prop_RIG_2nd1802210.01915.1
TkA01G197360PF23383Beta-prop_IFT140_1st1802120.0912.2
TkA01G197360PF24817WD40_WDHD1_1st1812132.3e-1247.4
TkA01G197360PF20426NBCH_WD401852090.001618.1
TkA01G197360PF12894ANAPC4_WD401872659.2e-0936.1
TkA01G197360PF24796WDR551892641.1e-0835.3
TkA01G197360PF24814WD40_Prp191914116.1e-1762.3
TkA01G197360PF25391WD40_Gbeta2033082.6e-0730.7
TkA01G197360PF25168Beta-prop_WDR36-Utp21_2nd2153732.5e-1350.7
TkA01G197360PF16755Beta-prop_NUP159_NUP2142233690.1611.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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