LXL04_004145 | RubberDandelionOmics

Gene overview

LXL04_004145

Reference: OH-1004 Chr: Chr01 Coordinates: 126383371-126386817 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1429 bp · LXL04_004145|LXL04_004145|OH1004|cDNA

CTATTCCCCAATAATTCACAGGGATTACAGAATGCCTGATAACGATGTTGAGGGAATCGATTACATGGCAGATGAGGTGGACATTTTGGACTTTGTGATGGAAGATGATGAGGTCAATGGTGGTGGAGCTCAGTTTGCTGATGATTATGACATGGTGACAGATACATCTTCAGCTCAAGCAAGAAGAGGCAAAGACATTCAAGGCATTCCATGGGAAAGACTGAATATAACAAGAGAAAGTTACAGACAAACAAGGCTGG...

CDS

Download CDS FASTA

1398 bp · LXL04_004145|LXL04_004145|OH1004|CDS

ATGCCTGATAACGATGTTGAGGGAATCGATTACATGGCAGATGAGGTGGACATTTTGGACTTTGTGATGGAAGATGATGAGGTCAATGGTGGTGGAGCTCAGTTTGCTGATGATTATGACATGGTGACAGATACATCTTCAGCTCAAGCAAGAAGAGGCAAAGACATTCAAGGCATTCCATGGGAAAGACTGAATATAACAAGAGAAAGTTACAGACAAACAAGGCTGGAACAATACAGAAACTATGAAAACATTCCTTT...

Protein

Download Protein FASTA

465 aa · LXL04_004145|LXL04_004145|OH1004|PROTEIN

MPDNDVEGIDYMADEVDILDFVMEDDEVNGGGAQFADDYDMVTDTSSAQARRGKDIQGIPWERLNITRESYRQTRLEQYRNYENIPLSGDAVDKKCKQKQKGGNYYEFFHNTRLVKPTILHFQLRNLVWATSKHDVYLMSNYSIMHWSSLSSNLTEILNFSGHVAPTEKHAGSLLEGFTQTQISTLSVKDDFLVAGGFQGELACKRLDKQGVSFCTRTTYDDNAITNAVEIYDSSSGGKHFMASNNDGGVREYDMDRFQL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004145`
TK1151 ID	TkA01G197360
OH-1004 ID	LXL04_004145
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 93.978 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_004145`
Location	Chr01:126383371-126386817 (+)
Description	Similar to SPBC2A9.03: Uncharacterized WD repeat-containing protein C2A9.03 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_004145` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0005829 cytosol Cellular Component GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference	ana:alr2800 spo:2540276 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.621

Rank 1 · LXL04_004145 · OH-1004

Cytoplasm0.492

Rank 2 · LXL04_004145 · OH-1004

Lysosome / Vacuole0.045

Rank 3 · LXL04_004145 · OH-1004

Cell membrane0.036

Rank 4 · LXL04_004145 · OH-1004

Mitochondrion0.034

Rank 5 · LXL04_004145 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24814.2WD40_Prp19191-412 aa

PF24807.2WD40_CDC20-Fz193-361 aa

PF25168.2Beta-prop_WDR36-Utp21_2nd215-373 aa

PF25173.2Beta-prop_WDR3_1st225-339 aa

PF25172.2Beta-prop_WDR3_2nd227-378 aa

PF25175.2Beta-prop_WDR5231-416 aa

PF25174.2Beta-prop_THOC3235-409 aa

PF24817.2WD40_WDHD1_1st236-342 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004145	`PF24814.2`	WD40_Prp19	191	412	6.6e-17	62.2
LXL04_004145	`PF24807.2`	WD40_CDC20-Fz	193	361	3.4e-17	63.4
LXL04_004145	`PF25168.2`	Beta-prop_WDR36-Utp21_2nd	215	373	2.9e-13	50.5
LXL04_004145	`PF25173.2`	Beta-prop_WDR3_1st	225	339	1.4e-16	61.5
LXL04_004145	`PF25172.2`	Beta-prop_WDR3_2nd	227	378	9.4e-07	29.0
LXL04_004145	`PF25175.2`	Beta-prop_WDR5	231	416	1.6e-15	57.9
LXL04_004145	`PF25174.2`	Beta-prop_THOC3	235	409	9.1e-21	74.8
LXL04_004145	`PF24817.2`	WD40_WDHD1_1st	236	342	3.6e-12	46.8
LXL04_004145	`PF23414.2`	Beta-prop_EML_2	239	346	7.3e-15	55.8
LXL04_004145	`PF25391.2`	WD40_Gbeta	270	381	3e-07	30.5
LXL04_004145	`PF23381.2`	Beta-prop_IFT122_1st	271	417	1.5e-16	61.3
LXL04_004145	`PF25173.2`	Beta-prop_WDR3_1st	273	416	1.4e-16	61.5
LXL04_004145	`PF24807.2`	WD40_CDC20-Fz	274	385	3.4e-17	63.4
LXL04_004145	`PF24796.2`	WDR55	274	392	1.2e-08	35.1
LXL04_004145	`PF24805.2`	EIF3I	279	371	1.6e-09	38.0
LXL04_004145	`PF00400.39`	WD40	299	337	5.3e-15	55.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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