RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G180790
Reference: TK1151 Chr: Chr01 Coordinates: 46371701-46375780 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1029 bp · TkA01G180790|TK1151|cDNA

ATGCCAATGGTTCTGAGTTATTTCGCCAGTATAAACAGCAGTCCAGCTGGACAGAAAGAAGGACCTGTGAAGTCACAGACTTCTGCAGACAAATACTGGGTTGAAGACGTGTGTTGCTGTTTGGATTCTAAAATTAAAATGAGTTTTAGTTGTAATCTTAGTTTTGGAAAATTGGTACTCCAAGTGTTCGATGTAATGTCACAAAGAGGAAAGTTTGAGGGTAAGTCACCTAATGGAAAACCTGCAAATGGCCATCTTAA...

CDS

Download CDS FASTA

1029 bp · TkA01G180790|TK1151|CDS

ATGCCAATGGTTCTGAGTTATTTCGCCAGTATAAACAGCAGTCCAGCTGGACAGAAAGAAGGACCTGTGAAGTCACAGACTTCTGCAGACAAATACTGGGTTGAAGACGTGTGTTGCTGTTTGGATTCTAAAATTAAAATGAGTTTTAGTTGTAATCTTAGTTTTGGAAAATTGGTACTCCAAGTGTTCGATGTAATGTCACAAAGAGGAAAGTTTGAGGGTAAGTCACCTAATGGAAAACCTGCAAATGGCCATCTTAA...

Protein

Download Protein FASTA

342 aa · TkA01G180790|TK1151|PROTEIN

MPMVLSYFASINSSPAGQKEGPVKSQTSADKYWVEDVCCCLDSKIKMSFSCNLSFGKLVLQVFDVMSQRGKFEGKSPNGKPANGHLNGKSKVKNQEISQDYSSQQLRVYNRFLKEGRLTDCLEKLEYLDRKGLLDMSNVMVNSRIEPNVHTYGALIDGCAKAGQVAKAFGAYEKKGTEIGLGEPASVYALQTFGSSRFLSRVDNDKFCLIKQNDDTWKEKYFFVKRNTIPGGKKLPMEWTRKASKFDDLASVSTNSETKG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G180790
TK1151 IDTkA01G180790
OH-1004 IDLXL04_025803
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)85.500
Protein coverage (%)TK1151 48.246 / OH-1004 41.954
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G180790
LocationChr01:46371701-46375780 (+)
DescriptionSimilar to PGI1: Glucose-6-phosphate isomerase 1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_025803 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005982 starch metabolic process Biological Process
GO:0006094 gluconeogenesis Biological Process
GO:0006096 glycolytic process Biological Process
GO:0009911 positive regulation of flower development Biological Process
GO:0051156 glucose 6-phosphate metabolic process Biological Process
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009536 plastid Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0004347 glucose-6-phosphate isomerase activity Molecular Function
GO:0048029 monosaccharide binding Molecular Function
KEGG gene cross-reference
ath:AT4G24620
cyc:PCC7424_3777
cyp:PCC8801_0439
mar:MAE_16590
npu:Npun_F3925
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.375
Rank 1 · TkA01G180790 · TK1151
Mitochondrion0.336
Rank 2 · TkA01G180790 · TK1151
Nucleus0.143
Rank 3 · TkA01G180790 · TK1151
Cytoplasm0.117
Rank 4 · TkA01G180790 · TK1151
Cell membrane0.044
Rank 5 · TkA01G180790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR57-70 aa
PF13812PPR_357-69 aa
PF13041PPR_259-70 aa
PF13041PPR_2112-133 aa
PF01535PPR112-132 aa
PF13041PPR_2135-161 aa
PF13812PPR_3140-168 aa
PF12854PPR_1145-169 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G180790PF01535PPR57700.0002221.9
TkA01G180790PF13812PPR_357690.05814.2
TkA01G180790PF13041PPR_259707.5e-0936.3
TkA01G180790PF13041PPR_21121337.5e-0936.3
TkA01G180790PF01535PPR1121320.0002221.9
TkA01G180790PF13041PPR_21351617.5e-0936.3
TkA01G180790PF13812PPR_31401680.05814.2
TkA01G180790PF12854PPR_11451692.8e-0627.7
TkA01G180790PF13041PPR_21471737.5e-0936.3
TkA01G180790PF01535PPR1511730.0002221.9
TkA01G180790PF27103YTH3_C3163340.113.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser