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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G178110
Reference: TK1151 Chr: Chr01 Coordinates: 45650273-45652471 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1656 bp · TkA01G178110|TK1151|cDNA

ATGAACTCATTGGTTGGTGAGATCCCCGGAGATGGGTTTGGTAACCTCACCGGACTGGTTCATCTTGACATGATCAAGAACCAGTTCACGGGTCCAATCCCACCATCGATTCAAAACCTAAGCAAGTTAGAAACCCTTCAGCTCAAGAACAACATGCTCGCCGGAGAAATCCCAACATGGTTATTCAACATCACAACTTTAAAGAAATTGATCATCGGAGGAAAAGGTAACCGCTTATTTTGGAACAATAAAGCAAAAAT...

CDS

Download CDS FASTA

1656 bp · TkA01G178110|TK1151|CDS

ATGAACTCATTGGTTGGTGAGATCCCCGGAGATGGGTTTGGTAACCTCACCGGACTGGTTCATCTTGACATGATCAAGAACCAGTTCACGGGTCCAATCCCACCATCGATTCAAAACCTAAGCAAGTTAGAAACCCTTCAGCTCAAGAACAACATGCTCGCCGGAGAAATCCCAACATGGTTATTCAACATCACAACTTTAAAGAAATTGATCATCGGAGGAAAAGGTAACCGCTTATTTTGGAACAATAAAGCAAAAAT...

Protein

Download Protein FASTA

551 aa · TkA01G178110|TK1151|PROTEIN

MNSLVGEIPGDGFGNLTGLVHLDMIKNQFTGPIPPSIQNLSKLETLQLKNNMLAGEIPTWLFNITTLKKLIIGGKGNRLFWNNKAKIVPKCKLEQISMSSCGFSGRIPEWISSQKDLNLLDLSQNQLEGNFPVWLARMDIGSIILSDNKLTGSLPPSLFESLSLSILALSRNNFSGELPENIGTARAIMVLMLSGNNFSGQIPMSISNIYRLLLLDLSRNRFSGDKFPVFGDNPLLAYIDLSNNNFSGEVPATFSTETQI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G178110
TK1151 IDTkA01G178110
OH-1004 IDLXL04_004227
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)96.800
Protein coverage (%)TK1151 88.385 / OH-1004 58.140
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G178110
LocationChr01:45650273-45652471 (+)
DescriptionSimilar to RLP46: Receptor-like protein 46
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g04220 Receptor-like protein 46. No verified direct reference in this release
At1g74170 Receptor-like protein 13. No verified direct reference in this release
At1g58195 Receptor-like protein 9b. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004227 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006898 receptor-mediated endocytosis Biological Process
GO:0007165 signal transduction Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010200 response to chitin Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0052544 defense response by callose deposition in cell wall Biological Process
GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005768 endosome Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G71400
ath:AT3G05660
ath:AT4G04220
ath:AT5G25910
ath:AT5G46330
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.855
Rank 1 · TkA01G178110 · TK1151
Endoplasmic reticulum0.090
Rank 2 · TkA01G178110 · TK1151
Cytoplasm0.056
Rank 3 · TkA01G178110 · TK1151
Nucleus0.037
Rank 4 · TkA01G178110 · TK1151
Lysosome / Vacuole0.028
Rank 5 · TkA01G178110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_83-53 aa
PF12799LRR_47-28 aa
PF23598LRR_148-127 aa
PF23211LRR_LRWD114-73 aa
PF00560LRR_119-40 aa
PF12799LRR_419-53 aa
PF13516LRR_619-31 aa
PF14337Abi_alpha21-51 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G178110PF13855LRR_83533.5e-36123.5
TkA01G178110PF12799LRR_47282.9e-2691.6
TkA01G178110PF23598LRR_1481279.8e-29100.9
TkA01G178110PF23211LRR_LRWD114730.0414.3
TkA01G178110PF00560LRR_119403.4e-53166.8
TkA01G178110PF12799LRR_419532.9e-2691.6
TkA01G178110PF13516LRR_619310.2312.3
TkA01G178110PF14337Abi_alpha21510.01116.5
TkA01G178110PF25019LRR_R13L1-DRL2129701.8e-0731.8
TkA01G178110PF25013LRR_Zer-137691.1e-0939.3
TkA01G178110PF14337Abi_alpha371270.01116.5
TkA01G178110PF23952LRR_EndoS38512.19.3
TkA01G178110PF13516LRR_641510.2312.3
TkA01G178110PF00560LRR_142633.4e-53166.8
TkA01G178110PF12799LRR_442722.9e-2691.6
TkA01G178110PF24758LRR_At5g5637042720.0008519.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JGB6Arabidopsis thalianasp|F4JGB6|RLP46_ARATH Receptor-like protein 4652.500%Swiss-ProtHigh
Q9C6A6Arabidopsis thalianasp|Q9C6A6|RLP13_ARATH Receptor-like protein 1334.000%Swiss-ProtLow
A0A1P8ATR9Arabidopsis thalianasp|A0A1P8ATR9|RLP9B_ARATH Receptor-like protein 9b32.200%Swiss-ProtLow

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