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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G168460
Reference: TK1151 Chr: Chr01 Coordinates: 43183009-43185467 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1239 bp · TkA01G168460|TK1151|cDNA

CATTGGCATGATAAAGGCAACTAAAAACAGCGGCCGAATCGACTCCTTCGACAAGTGTATTTCCCAACTCCGAACCGCTTGCAACATATATCATATTAGCTCTGATTATCCCAATCGATTCTCGAATCATAAGCTTAGATCGATCGACGTTGATTTGAACTCTTTTCTACCATAGATTTCAACAATCATGAGTTTTGTGTTTCGAGGGAGTAGGGGAGACATTGAAACAGGGTTTCCTGGATTTATACCCGAACGCCGTG...

CDS

Download CDS FASTA

795 bp · TkA01G168460|TK1151|CDS

ATGAGTTTTGTGTTTCGAGGGAGTAGGGGAGACATTGAAACAGGGTTTCCTGGATTTATACCCGAACGCCGTGCAGTGCGAATCCATGCACCTCGACCCGTTAACACAAACTCCCTCGCCTTTCTTGTCACAGTTCTGTTGCTTTTCATGATATTGAACTCCCACCAAATGTCACCTAACTTTTTGCTGTGGCTTGTACTTGGTGTGTTTTTGATGGCTACAAGCCTACGAATGTACGCCACCTGTCAGCAACTTCAAGC...

Protein

Download Protein FASTA

264 aa · TkA01G168460|TK1151|PROTEIN

MSFVFRGSRGDIETGFPGFIPERRAVRIHAPRPVNTNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATSLRMYATCQQLQAQAQANAVAASGLLGHTELRLQMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDIGPTANSMSEEDVNSLPVHKYKLANSKSGSLSEEQGSSSLTPEKLESGKSSEDELTCSVCLEQVNVGELVRSLPCLHQFHASCIDPWLRQQGTCPVCKFRVGSAWHENEEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G168460
TK1151 IDTkA01G168460
OH-1004 IDLXL04_014581
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)37.300
Protein coverage (%)TK1151 44.697 / OH-1004 12.535
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G168460
LocationChr01:43183009-43185467 (+)
DescriptionSimilar to SDIR1: E3 ubiquitin-protein ligase SDIR1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g55530 E3 ubiquitin-protein ligase that acts as a positive regulator of abscisic acid-related stress signal transduction.
SDIR1 is a RING finger E3 ligase that positively regulates stress-responsive abscisic acid signaling in Arabidopsis.2007 · DOI: 10.1105/tpc.106.048488
Arabidopsis SDIR1 enhances drought tolerance in crop plants.2008 · DOI: 10.1271/bbb.80286
The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis.2015 · DOI: 10.1105/tpc.114.134163

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0488800 Possesses E3 ubiqutin-protein ligase activity in vitro.
Molecular dissection of Oryza sativa salt-induced RING Finger Protein 1 (OsSIRP1): possible involvement in the sensitivity response to salinity stress.2016 · DOI: 10.1111/ppl.12459
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014581 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000578 embryonic axis specification Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006952 defense response Biological Process
GO:0009414 response to water deprivation Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
KEGG gene cross-reference
ath:AT3G47990
ath:AT3G55530
ath:AT5G66070
hsa:51132
xla:398680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.358
Rank 1 · TkA01G168460 · TK1151
Golgi apparatus0.252
Rank 2 · TkA01G168460 · TK1151
Cytoplasm0.209
Rank 3 · TkA01G168460 · TK1151
Lysosome / Vacuole0.192
Rank 4 · TkA01G168460 · TK1151
Nucleus0.173
Rank 5 · TkA01G168460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12678zf-rbx179-102 aa
PF13771zf-HC5HC2H183-233 aa
PF23413zf_RING_Vps8_fungal200-210 aa
PF24441DUF7560202-220 aa
PF11789zf-Nse202-246 aa
PF13920zf-C3HC4_3203-247 aa
PF11793FANCL_C203-240 aa
PF05605zf-Di19203-251 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G168460PF12678zf-rbx1791022e-0731.9
TkA01G168460PF13771zf-HC5HC2H1832330.03814.9
TkA01G168460PF23413zf_RING_Vps8_fungal2002109.36.3
TkA01G168460PF24441DUF75602022200.2112.0
TkA01G168460PF11789zf-Nse2022460.3111.6
TkA01G168460PF13920zf-C3HC4_32032470.001519.0
TkA01G168460PF11793FANCL_C2032400.7710.8
TkA01G168460PF05605zf-Di192032511.79.6
TkA01G168460PF13639zf-RING_22052477.2e-1452.5
TkA01G168460PF17120zf-RING_162052450.007916.5
TkA01G168460PF29452FAR1_N2052480.06713.9
TkA01G168460PF25998U-box_ZFPL12052380.3412.0
TkA01G168460PF24921RING_XB3-XBAT312052341.69.6
TkA01G168460PF17123zf-RING_112062335.1e-0936.4
TkA01G168460PF13923zf-C3HC4_22062466.6e-0936.1
TkA01G168460PF00097zf-C3HC42062461.3e-0835.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M2S6Arabidopsis thalianasp|Q9M2S6|SDIR1_ARATH E3 ubiquitin-protein ligase SDIR175.900%Swiss-ProtHigh
Q6AVN2Oryza sativa subsp. japonicasp|Q6AVN2|SIRP1_ORYSJ E3 ubiquitin-protein ligase SIRP148.100%Swiss-ProtLow

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