TkA01G164070 | RubberDandelionOmics

Gene overview

TkA01G164070

Reference: TK1151 Chr: Chr01 Coordinates: 41874152-41875429 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1158 bp · TkA01G164070|TK1151|cDNA

TTTGTTGTCTACATCATATATTATAATATTTATTTGCAGAGGATGAGGATGGAGATGGAGATGGAAACCACCACCACCACCGCCGCATCCACAGAGGCTGCGGCAAAGAAGACACTTTTACTCTTGAATACTATCTTGCTATCCATCGGAGTCTGCGGTGGTCCATTGATCATGCGGCTCTACTTCATCCACGGTGGCAACCGCATCTGGCTGTCATCTTTCCGGCCTCCAAGCTTGCGGATGGCCGGTCATCGTTCTAG...

CDS

Download CDS FASTA

663 bp · TkA01G164070|TK1151|CDS

ATGCGTCCAAGATTGCTCTTCTCGGTGGCGTTTATTGGTGTCCTCAATGGCGTAGACAACTACCTCTACGCACACGGCGTCAGCCGCCTCCCGGTTTCTACCTCCGCCCTCATCATAGCTTCCCAACTCGCTTTCACAGCCTTCTTCGCTTTCCTTCTCGTGAAACAGAAATTCACAGCCTATTCAATCAACGCGGTTGTACTTTTGACTGCTGGGTCGGCGGTCCTAGCATTGCATACAGACAGTGACCGGCCGGAGGG...

Protein

Download Protein FASTA

220 aa · TkA01G164070|TK1151|PROTEIN

MRPRLLFSVAFIGVLNGVDNYLYAHGVSRLPVSTSALIIASQLAFTAFFAFLLVKQKFTAYSINAVVLLTAGSAVLALHTDSDRPEGETKKQYLIGFLMTVAASLLYGFLLPLTELTYNKAKQEITYTLVLEFQTVMCLFAAMFSTVGMVINNDFKVIPREATEFELGKTEYYVILCLSAIFWQCFFLGVIGVIFCASSLLSGIIISVFLPVTEVREVSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G164070`
TK1151 ID	TkA01G164070
OH-1004 ID	LXL04_031136
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	76.600
Protein coverage (%)	TK1151 99.091 / OH-1004 58.289 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G164070

Location Chr01:41874152-41875429 (-)

Description Similar to PUP3: Purine permease 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28220`	May be involved in transport of purine derivatives during pollen germination and tube elongation.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x
`At1g28230`	Proton-coupled purine transporter mediating adenine and trans-zeatin uptake.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.2013 · DOI: 10.1111/tpj.12195
`At2g33750`	Mediates adenine transport.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x
`At2g24220`	Probable purine permease 5.	No verified direct reference in this release
`At4g18205`	Probable purine permease 22.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031136 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006863 purine nucleobase transport Biological Process

GO:0009624 response to nematode Biological Process

GO:0010184 cytokinin transport Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005345 purine nucleobase transmembrane transporter activity Molecular Function

GO:0015211 purine nucleoside transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G28220

ath:AT1G28230

ath:AT2G33750

ath:AT4G18210

ath:AT4G18220

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.382

Rank 1 · TkA01G164070 · TK1151

Lysosome / Vacuole0.285

Rank 2 · TkA01G164070 · TK1151

Endoplasmic reticulum0.173

Rank 3 · TkA01G164070 · TK1151

Golgi apparatus0.117

Rank 4 · TkA01G164070 · TK1151

Cytoplasm0.098

Rank 5 · TkA01G164070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16913PUNUT3-216 aa

PF25259DUF78605-16 aa

PF00892EamA6-76 aa

PF10639TMEM23414-75 aa

PF04142Nuc_sug_transp16-109 aa

PF08449UAA31-173 aa

PF04087DUF38935-78 aa

PF10639TMEM23490-118 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G164070	`PF16913`	PUNUT	3	216	2.2e-77	261.2
TkA01G164070	`PF25259`	DUF7860	5	16	1.3	9.9
TkA01G164070	`PF00892`	EamA	6	76	1.1e-07	32.9
TkA01G164070	`PF10639`	TMEM234	14	75	0.038	14.8
TkA01G164070	`PF04142`	Nuc_sug_transp	16	109	7.8e-05	22.7
TkA01G164070	`PF08449`	UAA	31	173	3.6e-05	23.8
TkA01G164070	`PF04087`	DUF389	35	78	7.6	7.3
TkA01G164070	`PF10639`	TMEM234	90	118	0.038	14.8
TkA01G164070	`PF04087`	DUF389	90	149	7.6	7.3
TkA01G164070	`PF25259`	DUF7860	94	115	1.3	9.9
TkA01G164070	`PF00892`	EamA	95	194	1.1e-07	32.9
TkA01G164070	`PF04142`	Nuc_sug_transp	171	195	7.8e-05	22.7
TkA01G164070	`PF04087`	DUF389	194	208	7.6	7.3
TkA01G164070	`PF25259`	DUF7860	196	214	1.3	9.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ95`	Arabidopsis thaliana	sp\|Q9FZ95\|PUP3_ARATH Purine permease 3	60.600%	Swiss-Prot	High
`Q9FZ96`	Arabidopsis thaliana	sp\|Q9FZ96\|PUP1_ARATH Purine permease 1	62.500%	Swiss-Prot	High
`Q94GB1`	Arabidopsis thaliana	sp\|Q94GB1\|PUP2_ARATH Purine permease 2	53.700%	Swiss-Prot	High
`Q9ZUH3`	Arabidopsis thaliana	sp\|Q9ZUH3\|PUP5_ARATH Probable purine permease 5	36.200%	Swiss-Prot	Medium
`Q8RY74`	Arabidopsis thaliana	sp\|Q8RY74\|PUP22_ARATH Probable purine permease 22	39.900%	Swiss-Prot	Medium

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