RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G158920
Reference: TK1151 Chr: Chr01 Coordinates: 40622479-40635761 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3045 bp · TkA01G158920|TK1151|cDNA

ATGGATACTTCTGTCTTATCCAATCAAACCCTAACCATCGCTCATCAAAACTGTTATGCCAATCTTGATTATACACAATATCCTGATTCACTTCATGTCATTATTGAGTTTCTCAAATCCTCTGTCATCAATAAAGCCCTTACCGCTCGTGCTAACGTTTCTATCAAAACCCTAACCAAGGCGTATACATCATCGAAGTTCAATTTATCGAAGAACATTGTTGAGTTTGAACTCGATTCTGGAAAACGTACCGCCATCAC...

CDS

Download CDS FASTA

3045 bp · TkA01G158920|TK1151|CDS

ATGGATACTTCTGTCTTATCCAATCAAACCCTAACCATCGCTCATCAAAACTGTTATGCCAATCTTGATTATACACAATATCCTGATTCACTTCATGTCATTATTGAGTTTCTCAAATCCTCTGTCATCAATAAAGCCCTTACCGCTCGTGCTAACGTTTCTATCAAAACCCTAACCAAGGCGTATACATCATCGAAGTTCAATTTATCGAAGAACATTGTTGAGTTTGAACTCGATTCTGGAAAACGTACCGCCATCAC...

Protein

Download Protein FASTA

1014 aa · TkA01G158920|TK1151|PROTEIN

MDTSVLSNQTLTIAHQNCYANLDYTQYPDSLHVIIEFLKSSVINKALTARANVSIKTLTKAYTSSKFNLSKNIVEFELDSGKRTAITKSAFTRLFDLPTDPALIDPDTVSSADMITACNQMGHTPILTRLSAFKKNKLPSIWSCLFTILFKCLAERQTGTDSASKQFLTLMYALFTDAQVDLGKILWTQFCESPTSATKDVEISMGRFWSLVVDYAHRHYKITPEPLADEEIAIFPEVQIGKLQIKSDRNCEFVGKIPEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G158920
TK1151 IDTkA01G158920
OH-1004 IDLXL04_037282
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)56.300
Protein coverage (%)TK1151 99.211 / OH-1004 80.192
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G158920
LocationChr01:40622479-40635761 (-)
DescriptionSimilar to EEF1AKMT2: EEF1A lysine methyltransferase 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037282 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006479 protein methylation Biological Process
GO:0018022 peptidyl-lysine methylation Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0008168 methyltransferase activity Molecular Function
GO:0016279 protein-lysine N-methyltransferase activity Molecular Function
KEGG gene cross-reference
dre:503749
hsa:399818
mmu:72096
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.887
Rank 1 · TkA01G158920 · TK1151
Cytoplasm0.201
Rank 2 · TkA01G158920 · TK1151
Mitochondrion0.033
Rank 3 · TkA01G158920 · TK1151
Cell membrane0.018
Rank 4 · TkA01G158920 · TK1151
Endoplasmic reticulum0.009
Rank 5 · TkA01G158920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07889DUF166454-107 aa
PF05600CDK5RAP3455-629 aa
PF07889DUF1664482-541 aa
PF05667CCDC22_CC487-634 aa
PF05884ZYG-11_interact511-582 aa
PF16073SAT519-565 aa
PF07889DUF1664522-602 aa
PF09548Spore_III_AB523-625 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G158920PF07889DUF1664541078.97.1
TkA01G158920PF05600CDK5RAP34556290.004816.5
TkA01G158920PF07889DUF16644825418.97.1
TkA01G158920PF05667CCDC22_CC4876340.1611.8
TkA01G158920PF05884ZYG-11_interact5115826.86.7
TkA01G158920PF16073SAT5195650.1412.4
TkA01G158920PF07889DUF16645226028.97.1
TkA01G158920PF09548Spore_III_AB5236259.46.7
TkA01G158920PF29146UCC1_N5275891.410.1
TkA01G158920PF02743dCache_15276026.67.7
TkA01G158920PF05478Prominin5276668.05.1
TkA01G158920PF05884ZYG-11_interact5826366.86.7
TkA01G158920PF07889DUF16646366678.97.1
TkA01G158920PF05667CCDC22_CC7177500.1611.8
TkA01G158920PF05600CDK5RAP37227410.004816.5
TkA01G158920PF16073SAT8669180.1412.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser