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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G150030
Reference: TK1151 Chr: Chr01 Coordinates: 38065774-38070685 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2387 bp · TkA01G150030|TK1151|cDNA

CGTAATTTAGCAAAATATCTGTATATCATACACCGTAGTGTACACCATGAACTTGAAAGAGGATAAAACCTGTACTCTCACTCGTATCCTTTACCCGCCAAACTTCGGCCGTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTGTGCGCCAATTTGAATCAACAATGTCATCTCTTGATGTACCCTCACATGTTTCTCTCTCTAGAATTATCTCTCTTTGCTCTCCAGTATCCAGCTTCTCTCAATCTTCTTCGCT...

CDS

Download CDS FASTA

1965 bp · TkA01G150030|TK1151|CDS

ATGTCATCTCTTGATGTACCCTCACATGTTTCTCTCTCTAGAATTATCTCTCTTTGCTCTCCAGTATCCAGCTTCTCTCAATCTTCTTCGCTCCTCCTTCCAAATTCCTCATCCAGTCTATCTCTTTGTCTATCAGCTGTATCTCTTCACCGCCGCCGTTGTAAAACCACTATCTCATCGTGTAGTCCATCGGAAGGAGAGTTTGAATCAGTAGACGAAGAACTAGCGGGAATTGAAGATGATGTGGAGTCCGATTTCGA...

Protein

Download Protein FASTA

654 aa · TkA01G150030|TK1151|PROTEIN

MSSLDVPSHVSLSRIISLCSPVSSFSQSSSLLLPNSSSSLSLCLSAVSLHRRRCKTTISSCSPSEGEFESVDEELAGIEDDVESDFEDVSDEKLDVDELELEAEKAVREYSLSLSKELKIEEEPVADKETRGRRKMRESIKVVNIPDHLLPKVSIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRLYGRAFWGDREFMVIDTGGVLTVSKTQTDVMEQQLSVSTTIGMEGIPLASREAAVARMPSMIERQATVAVEE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G150030
TK1151 IDTkA01G150030
OH-1004 IDLXL04_004436
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G150030
LocationChr01:38065774-38070685 (+)
DescriptionSimilar to der: GTPase Der (Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004436 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042254 ribosome biogenesis Biological Process
GO:0005525 GTP binding Molecular Function
GO:0043022 ribosome binding Molecular Function
KEGG gene cross-reference
ana:alr0483
ava:Ava_2896
npu:Npun_R1702
tel:tlr0878
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.927
Rank 1 · TkA01G150030 · TK1151
Mitochondrion0.075
Rank 2 · TkA01G150030 · TK1151
Nucleus0.038
Rank 3 · TkA01G150030 · TK1151
Cytoplasm0.025
Rank 4 · TkA01G150030 · TK1151
Cell membrane0.012
Rank 5 · TkA01G150030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00350Dynamin_N63-97 aa
PF02263GBP138-177 aa
PF05621TniB148-169 aa
PF09439SRPRB151-174 aa
PF01926MMR_HSR1152-300 aa
PF02421FeoB_N152-217 aa
PF00009GTP_EFTU152-175 aa
PF08477Roc152-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G150030PF00350Dynamin_N63974.4e-1040.6
TkA01G150030PF02263GBP1381770.2811.0
TkA01G150030PF05621TniB1481690.001119.1
TkA01G150030PF09439SRPRB1511740.001918.4
TkA01G150030PF01926MMR_HSR11523003.1e-53179.4
TkA01G150030PF02421FeoB_N1522172.3e-1970.2
TkA01G150030PF00009GTP_EFTU1521758.2e-0936.0
TkA01G150030PF08477Roc1521743.1e-0628.1
TkA01G150030PF00071Ras1521710.01815.4
TkA01G150030PF00005ABC_tran1521730.0714.4
TkA01G150030PF00350Dynamin_N1531744.4e-1040.6
TkA01G150030PF03193RsgA_GTPase1531753.6e-0627.6
TkA01G150030PF13555AAA_291531670.1612.4
TkA01G150030PF04548AIG11552346e-1039.5
TkA01G150030PF00350Dynamin_N2012834.4e-1040.6
TkA01G150030PF03193RsgA_GTPase2383333.6e-0627.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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