TkA01G136000 | RubberDandelionOmics

Gene overview

TkA01G136000

Reference: TK1151 Chr: Chr01 Coordinates: 34501605-34503869 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1917 bp · TkA01G136000|TK1151|cDNA

CAGGCACCATGTCATACAACTTTGAGCGGTATAAATAGATAAAGCATCAAGATCCCGAGAATTTAGAAACCATTTGGTGCAAGTTCCTTATTATCTTTTCTCAACGTGAACACTATTACACTAGTTGCGCAGTATTCCGATCACGCCGGCCACCACTACCATCTCCGGGAAAACAGAGACACTCAGTGTTGATGGAGAAATCCACGGGTTATTGCCGCGACGGCATATTCCGGTCACTCCGGCCACCACTAGCCATCCCA...

CDS

Download CDS FASTA

1623 bp · TkA01G136000|TK1151|CDS

ATGGAGAAATCCACGGGTTATTGCCGCGACGGCATATTCCGGTCACTCCGGCCACCACTAGCCATCCCAGCAGGCCCCAACACATCCATGATTTCCTTCCTCTTCCGTAACGTGTCATCTTACCCACACAAACCTGCCTTAATCGACTCCGGCTCCGGCGAAACCCTCACTTTCTCTGAATTCAAAACCACCGTCGCTAAGCTCTCTCACGCATTAAACATTGAACTGGGTATCACTAAGAACGACGTCGTCCTCATCTT...

Protein

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540 aa · TkA01G136000|TK1151|PROTEIN

MEKSTGYCRDGIFRSLRPPLAIPAGPNTSMISFLFRNVSSYPHKPALIDSGSGETLTFSEFKTTVAKLSHALNIELGITKNDVVLIFAPNSIQYPICSYSIIALGAIVTTVNPQSTAGDLSKQIQDSHPKLIITTQESYQIVENFGLPVLFLGSKTSRNGVFSYTDLISKYLSVSELPNVSIRGDDTAALLYSSGTIGVSKGVVLSHKNFIVASQMITSDQRLMRDQDYVHLCFLPMFHIFAFAVILYSQLQEGNTVVSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G136000`
TK1151 ID	TkA01G136000
OH-1004 ID	LXL04_004549
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.600
Protein coverage (%)	TK1151 99.815 / OH-1004 88.468 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G136000

Location Chr01:34501605-34503869 (+)

Description Similar to 4CLL7: 4-coumarate--CoA ligase-like 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05160`	Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.	A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid.2005 · DOI: 10.1074/jbc.m413578200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0152400`	Carboxylate--CoA ligase that may use 4-coumarate as substrate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004549 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0009698 phenylpropanoid metabolic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004321 fatty-acyl-CoA synthase activity Molecular Function

GO:0004467 long-chain fatty acid-CoA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016207 4-coumarate-CoA ligase activity Molecular Function

GO:0016405 CoA-ligase activity Molecular Function

GO:0106290 trans-cinnamate-CoA ligase activity Molecular Function

KEGG gene cross-reference

ath:AT4G05160

dosa:Os03g0152400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.405

Rank 1 · TkA01G136000 · TK1151

Cytoplasm0.376

Rank 2 · TkA01G136000 · TK1151

Nucleus0.107

Rank 3 · TkA01G136000 · TK1151

Mitochondrion0.098

Rank 4 · TkA01G136000 · TK1151

Plastid0.056

Rank 5 · TkA01G136000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00501AMP-binding35-400 aa

PF13193AMP-binding_C451-526 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G136000	`PF00501`	AMP-binding	35	400	1.9e-80	271.2
TkA01G136000	`PF13193`	AMP-binding_C	451	526	3.7e-14	54.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X9`	Arabidopsis thaliana	sp\|Q9M0X9\|4CLL7_ARATH 4-coumarate--CoA ligase-like 7	57.200%	Swiss-Prot	High
`Q0DV32`	Oryza sativa subsp. japonica	sp\|Q0DV32\|4CLL1_ORYSJ 4-coumarate--CoA ligase-like 1	48.600%	Swiss-Prot	Medium

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