LXL04_004549 | RubberDandelionOmics

Gene overview

LXL04_004549

Reference: OH-1004 Chr: Chr01 Coordinates: 139920836-139924825 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1824 bp · LXL04_004549|LXL04_004549|OH1004|cDNA

ATGAGGCGAGTTCCATCCTGTCTTTATTTGAACGGATTCCTTTCTTACAACTATCATATTCTAAAACTGAATAGACTTTGCCTTACAATGATCAACGACTTTATTCTTGAGAATTCACCAGGTGGTGAAATCTCCATTCTTGAGTACCTCTCACAAAATCTGTTCTTATTTGTTGTTACCATGAACACTTTGGCAGCACCTGAGTCGATGGAGAAATCCGGTCGTGGTCGCGACGGAATATTCCGATCACTCCGGCCACC...

CDS

Download CDS FASTA

1824 bp · LXL04_004549|LXL04_004549|OH1004|CDS

ATGAGGCGAGTTCCATCCTGTCTTTATTTGAACGGATTCCTTTCTTACAACTATCATATTCTAAAACTGAATAGACTTTGCCTTACAATGATCAACGACTTTATTCTTGAGAATTCACCAGGTGGTGAAATCTCCATTCTTGAGTACCTCTCACAAAATCTGTTCTTATTTGTTGTTACCATGAACACTTTGGCAGCACCTGAGTCGATGGAGAAATCCGGTCGTGGTCGCGACGGAATATTCCGATCACTCCGGCCACC...

Protein

Download Protein FASTA

607 aa · LXL04_004549|LXL04_004549|OH1004|PROTEIN

MRRVPSCLYLNGFLSYNYHILKLNRLCLTMINDFILENSPGGEISILEYLSQNLFLFVVTMNTLAAPESMEKSGRGRDGIFRSLRPPLVIPTDSNTSMISFLFRNTSSSPNKPALFDSDSGDTLTFSEIKTTVAKFSYALNTQFGITKNDVVLIFAPNSIQYPICSYSIIALGAIVTTANPQYTVRELSKQIEDSNPKLIFTVQELYPKVENFGLPVILLGPESSINGCFSYKDLISKHGLVSELPKVSIRGDDTAALLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004549`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004549

Location Chr01:139920836-139924825 (-)

Description Similar to 4CLL7: 4-coumarate--CoA ligase-like 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05160`	Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.	A new type of peroxisomal acyl-coenzyme A synthetase from Arabidopsis thaliana has the catalytic capacity to activate biosynthetic precursors of jasmonic acid.2005 · DOI: 10.1074/jbc.m413578200

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0152400`	Carboxylate--CoA ligase that may use 4-coumarate as substrate.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004549 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009695 jasmonic acid biosynthetic process Biological Process

GO:0009698 phenylpropanoid metabolic process Biological Process

GO:0031408 oxylipin biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005777 peroxisome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004321 fatty-acyl-CoA synthase activity Molecular Function

GO:0004467 long-chain fatty acid-CoA ligase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016207 4-coumarate-CoA ligase activity Molecular Function

GO:0016405 CoA-ligase activity Molecular Function

GO:0106290 trans-cinnamate-CoA ligase activity Molecular Function

KEGG gene cross-reference

ath:AT4G05160

dosa:Os03g0152400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.453

Rank 1 · LXL04_004549 · OH-1004

Cytoplasm0.252

Rank 2 · LXL04_004549 · OH-1004

Endoplasmic reticulum0.107

Rank 3 · LXL04_004549 · OH-1004

Mitochondrion0.098

Rank 4 · LXL04_004549 · OH-1004

Nucleus0.089

Rank 5 · LXL04_004549 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00501.35AMP-binding104-467 aa

PF13193.13AMP-binding_C518-593 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004549	`PF00501.35`	AMP-binding	104	467	4.3e-84	283.3
LXL04_004549	`PF13193.13`	AMP-binding_C	518	593	8.4e-19	69.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0X9`	Arabidopsis thaliana	4-coumarate--CoA ligase-like 7	63.670%	Swiss-Prot	strong database homology
`Q0DV32`	Oryza sativa subsp. japonica	4-coumarate--CoA ligase-like 1	52.347%	Swiss-Prot	strong database homology

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