TkA01G116250 | RubberDandelionOmics

Gene overview

TkA01G116250

Reference: TK1151 Chr: Chr01 Coordinates: 29432648-29434469 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

985 bp · TkA01G116250|TK1151|cDNA

CGGCTTGCAAAAGGATCGGAAGTTTTCATTTCGTTCTTCTTTTCTGAATCAATCCCAAAACAGGTGAGAGCGAGAGAGCTAGGGTTTTTGCGCATTGTACCGGAAAAGTTACAGCAGATGGATGCATCAATGGAGAAGAGGGTTGAATCTGATAAGCTTAACAACACTCAATCAGAGTACGATTCATCTGAAGATCGCGAACGGCAATCGCGCGAGCTTAAAGCTGGTTTGCATCCTCTCAAGAACAAGTTTGTCTTTTG...

CDS

Download CDS FASTA

774 bp · TkA01G116250|TK1151|CDS

CGGCTTGCAAAAGGATCGGAAGTTTTCATTTCGTTCTTCTTTTCTGAATCAATCCCAAAACAGGTGAGAGCGAGAGAGCTAGGGTTTTTGCGCATTGTACCGGAAAAGTTACAGCAGATGGATGCATCAATGGAGAAGAGGGTTGAATCTGATAAGCTTAACAACACTCAATCAGAGTACGATTCATCTGAAGATCGCGAACGGCAATCGCGCGAGCTTAAAGCTGGTTTGCATCCTCTCAAGAACAAGTTTGTCTTTTG...

Protein

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257 aa · TkA01G116250|TK1151|PROTEIN

RLAKGSEVFISFFFSESIPKQVRARELGFLRIVPEKLQQMDASMEKRVESDKLNNTQSEYDSSEDRERQSRELKAGLHPLKNKFVFWYTRRTPGVRTQTSYEDNIKQIMDFSTVEGFWICYCHLARPSSLPSPTDLHLFKQGIRPLWEDSANCNGGKWIVRFKKPVSGRFWEDLVLALVGDQLDYSDNICGIVLSVRFNEDILSVWNRNASDNQVVMALRDKIKRHLKLPHGYVMEYKPHDASLRDNSSYRNTWLRG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G116250`
TK1151 ID	TkA01G116250
OH-1004 ID	LXL04_014615
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	37.200
Protein coverage (%)	TK1151 57.198 / OH-1004 76.166 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G116250

Location Chr01:29432648-29434469 (+)

Description Similar to Eukaryotic translation initiation factor isoform 4E-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18110`	Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.	Identification and characterization of a novel cap-binding protein from Arabidopsis thaliana.1998 · DOI: 10.1074/jbc.273.17.10325

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0262400`	Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014615 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006413 translational initiation Biological Process

GO:0006417 regulation of translation Biological Process

GO:0006952 defense response Biological Process

GO:0009615 response to virus Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016281 eukaryotic translation initiation factor 4F complex Cellular Component

GO:0000340 RNA 7-methylguanosine cap binding Molecular Function

GO:0003723 RNA binding Molecular Function

GO:0003743 translation initiation factor activity Molecular Function

KEGG gene cross-reference

cann:107853558

nta:107770125

sly:100134893

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.551

Rank 1 · TkA01G116250 · TK1151

Cytoplasm0.469

Rank 2 · TkA01G116250 · TK1151

Cell membrane0.056

Rank 3 · TkA01G116250 · TK1151

Mitochondrion0.055

Rank 4 · TkA01G116250 · TK1151

Endoplasmic reticulum0.036

Rank 5 · TkA01G116250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01652IF4E54-69 aa

PF01652IF4E79-252 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G116250	`PF01652`	IF4E	54	69	3.2e-61	206.7
TkA01G116250	`PF01652`	IF4E	79	252	3.2e-61	206.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FK59`	Arabidopsis thaliana	sp\|Q9FK59\|IF4E5_ARATH Eukaryotic translation initiation factor NCBP	82.700%	Swiss-Prot	High
`Q10NQ9`	Oryza sativa subsp. japonica	sp\|Q10NQ9\|IF4E3_ORYSJ Eukaryotic translation initiation factor NCBP	82.500%	Swiss-Prot	High

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