Gene Card
Gene overview
cDNA / CDS / Protein Sequences
582 bp · LXL04_014615|LXL04_014615|OH1004|cDNA
ATGGCGAGTGACGGCGCAGCGGTGGATGTTAGCGTAGAAGCGGCGGAACAGCCCCATAGGTTAGATAAGAAGTGGACGTTTTGGTTTGATAATCAATCTAAACCTAAACAAGGCGCCGGTTGGGGGAATAATCTTCGTAACGCGTACACATTCGATACAGTTGAAGAGTTTTGGTGTTTGTATGATCAGGTATTCAAGCCTAGCAAGCTGCCAGGAAATGCTGATTTCCATTTGTTCAAAGCTGGTGTTGAGCCTAAATG...
582 bp · LXL04_014615|LXL04_014615|OH1004|CDS
ATGGCGAGTGACGGCGCAGCGGTGGATGTTAGCGTAGAAGCGGCGGAACAGCCCCATAGGTTAGATAAGAAGTGGACGTTTTGGTTTGATAATCAATCTAAACCTAAACAAGGCGCCGGTTGGGGGAATAATCTTCGTAACGCGTACACATTCGATACAGTTGAAGAGTTTTGGTGTTTGTATGATCAGGTATTCAAGCCTAGCAAGCTGCCAGGAAATGCTGATTTCCATTTGTTCAAAGCTGGTGTTGAGCCTAAATG...
Protein
Download Protein FASTA193 aa · LXL04_014615|LXL04_014615|OH1004|PROTEIN
MASDGAAVDVSVEAAEQPHRLDKKWTFWFDNQSKPKQGAGWGNNLRNAYTFDTVEEFWCLYDQVFKPSKLPGNADFHLFKAGVEPKWEDPECANGGKWTVTSSRKANLETMWFETLMALIGEQFEEADEICGVVASVRQRQDKLSLWTKNAANEAAQMSIGRKWKEIIDVTDKITYNFHDDSKTRTSKGRYSV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_014615 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_014615 |
|---|---|
| Location | Chr03:53797969-53799209 (+) |
| Description | Similar to Eukaryotic translation initiation factor isoform 4E-2 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006413 translational initiation Biological Process GO:0006417 regulation of translation Biological Process GO:0006952 defense response Biological Process GO:0009615 response to virus Biological Process GO:0051607 defense response to virus Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0016281 eukaryotic translation initiation factor 4F complex Cellular Component GO:0000340 RNA 7-methylguanosine cap binding Molecular Function GO:0003723 RNA binding Molecular Function GO:0003743 translation initiation factor activity Molecular Function |
| KEGG gene cross-reference | cann:107853558 nta:107770125 sly:100134893 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01652.25IF4E21-188 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_014615 | PF01652.25 | IF4E | 21 | 188 | 3e-61 | 206.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.