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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G102890
Reference: TK1151 Chr: Chr01 Coordinates: 26094632-26097301 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1408 bp · TkA01G102890|TK1151|cDNA

CACTCTGCTCTCATATAACTTTGTAATTATCAATAGTTTGGTTAACGAATCAAGATCTGAATCAGGAACTTTGACAAGTAAAAACAAAGATGAACGATCTGTTTTCTGGATCCTTCTCTCGTTTCCGCAGCGAAGAAGGATCACCGCCGCAACCATCTCGTTTCCAGAAGGACCAGAACAACGTCGAGATGACAGGTAACGCGCCGTCTACCGGCGGCGTCAACCTCGACAAGTTTTTTGAAGACGTCGAGGCGATTAAG...

CDS

Download CDS FASTA

1023 bp · TkA01G102890|TK1151|CDS

ATGAACGATCTGTTTTCTGGATCCTTCTCTCGTTTCCGCAGCGAAGAAGGATCACCGCCGCAACCATCTCGTTTCCAGAAGGACCAGAACAACGTCGAGATGACAGGTAACGCGCCGTCTACCGGCGGCGTCAACCTCGACAAGTTTTTTGAAGACGTCGAGGCGATTAAGGACGAGCTGCGAGCACTTGAGACGTTGCATAACCAGCTACAGTCGTCGCACGAGCATAGCAAAACGCTACACAACGCCAAATCGGTGAA...

Protein

Download Protein FASTA

340 aa · TkA01G102890|TK1151|PROTEIN

MNDLFSGSFSRFRSEEGSPPQPSRFQKDQNNVEMTGNAPSTGGVNLDKFFEDVEAIKDELRALETLHNQLQSSHEHSKTLHNAKSVKEVRSKMDNDVAVSLKKAKFIKVRLEALDRSNAANRSVPGCGPGSSSDRTRTSVVNGLRKKLSDSMNSFNDLRNKMASEYRETVQRRYFTVTGENPDESTVDTLISTGQSETFLQKAIQEQGRGQVMDTILEIKERHDAVKEIERNLKELHQVFMDMAVLVESQGEQLDDIENQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G102890
TK1151 IDTkA01G102890
OH-1004 IDLXL04_004834
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 91.765 / OH-1004 92.582
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G102890
LocationChr01:26094632-26097301 (-)
DescriptionSimilar to SYP121: Syntaxin-121
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g11820 Vesicle trafficking protein that functions in the secretory pathway (By similarity).
Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159
At1g61290 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At1g11250 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At3g52400 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At4g03330 Vesicle trafficking protein that functions in the secretory pathway (Probable).
Syntaxin of plant proteins SYP123 and SYP132 mediate root hair tip growth in Arabidopsis thaliana.2014 · DOI: 10.1093/pcp/pcu048

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004834 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006612 protein targeting to membrane Biological Process
GO:0006886 intracellular protein transport Biological Process
GO:0006887 exocytosis Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0006952 defense response Biological Process
GO:0009620 response to fungus Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009860 pollen tube growth Biological Process
GO:0010119 regulation of stomatal movement Biological Process
GO:0010148 transpiration Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0031348 negative regulation of defense response Biological Process
KEGG gene cross-reference
ath:AT1G11250
ath:AT1G61290
ath:AT3G11820
ath:AT3G52400
dosa:Os03g0787000
osa:4334356
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.558
Rank 1 · TkA01G102890 · TK1151
Cytoplasm0.248
Rank 2 · TkA01G102890 · TK1151
Lysosome / Vacuole0.173
Rank 3 · TkA01G102890 · TK1151
Golgi apparatus0.139
Rank 4 · TkA01G102890 · TK1151
Endoplasmic reticulum0.092
Rank 5 · TkA01G102890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00015MCPsignal28-79 aa
PF17396DUF1611_N32-90 aa
PF07889DUF166443-95 aa
PF00804Syntaxin45-204 aa
PF10046BLOC1_245-71 aa
PF05478Prominin46-177 aa
PF28258MSC_0620_UU05247-95 aa
PF02646RmuC47-89 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G102890PF00015MCPsignal28790.212.2
TkA01G102890PF17396DUF1611_N32900.1113.6
TkA01G102890PF07889DUF166443950.9210.3
TkA01G102890PF00804Syntaxin452042e-53181.1
TkA01G102890PF10046BLOC1_245711.410.1
TkA01G102890PF05478Prominin461771.87.3
TkA01G102890PF28258MSC_0620_UU05247950.001717.7
TkA01G102890PF02646RmuC47890.749.6
TkA01G102890PF00435Spectrin48940.003718.5
TkA01G102890PF00482T2SSF48740.0414.6
TkA01G102890PF19103DUF579049930.2612.6
TkA01G102890PF05073Baculo_p24491016.07.5
TkA01G102890PF28690SPACA6_N501280.2512.8
TkA01G102890PF05531NPV_P1051800.3512.1
TkA01G102890PF03564DUF175951974.87.9
TkA01G102890PF05739SNARE52715.6e-2794.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZSD4Arabidopsis thalianasp|Q9ZSD4|SY121_ARATH Syntaxin-12172.800%Swiss-ProtHigh
O64791Arabidopsis thalianasp|O64791|SY124_ARATH Syntaxin-12460.100%Swiss-ProtHigh
Q9SXB0Arabidopsis thalianasp|Q9SXB0|SY125_ARATH Syntaxin-12557.300%Swiss-ProtHigh
Q9SVC2Arabidopsis thalianasp|Q9SVC2|SY122_ARATH Syntaxin-12259.400%Swiss-ProtHigh
Q9ZQZ8Arabidopsis thalianasp|Q9ZQZ8|SY123_ARATH Syntaxin-12356.000%Swiss-ProtHigh

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