LXL04_004834 | RubberDandelionOmics

Gene overview

LXL04_004834

Reference: OH-1004 Chr: Chr01 Coordinates: 148462179-148463192 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1014 bp · LXL04_004834|LXL04_004834|OH1004|cDNA

ATGAACGATCTGTTTTCTGGATCCTTCTCTCGTTTCCGCAGCGAAGAAGGATCACCGCCGCAACCATCTCGTTTCCAGAAGGACCAGAACAACGTCGAGATGACAGGTAACGCGCCGTCGACCGGCGGCGTCAACCTCGACAAGTTTTTTGAAGATGTCGAGGCGATTAAGGACGAGCTGCGAGCACTTGAGACGTTGCACAACCAGCTCCAGTCGTCGCACGAGCATAGCAAAACGCTACACAACGCCAAATCGGTGAA...

CDS

Download CDS FASTA

1014 bp · LXL04_004834|LXL04_004834|OH1004|CDS

ATGAACGATCTGTTTTCTGGATCCTTCTCTCGTTTCCGCAGCGAAGAAGGATCACCGCCGCAACCATCTCGTTTCCAGAAGGACCAGAACAACGTCGAGATGACAGGTAACGCGCCGTCGACCGGCGGCGTCAACCTCGACAAGTTTTTTGAAGATGTCGAGGCGATTAAGGACGAGCTGCGAGCACTTGAGACGTTGCACAACCAGCTCCAGTCGTCGCACGAGCATAGCAAAACGCTACACAACGCCAAATCGGTGAA...

Protein

Download Protein FASTA

337 aa · LXL04_004834|LXL04_004834|OH1004|PROTEIN

MNDLFSGSFSRFRSEEGSPPQPSRFQKDQNNVEMTGNAPSTGGVNLDKFFEDVEAIKDELRALETLHNQLQSSHEHSKTLHNAKSVKEVRSKMDNDVAVSLKKAKFIKVRLEALDRSNAANRSVPGCGPGSSSDRTRTSVVNGLRKKLSDSMNSFNDLRNKMASEYRETVQRRYFTVTGENPDESTVDTLISTGQSETFLQKAIQEQGRGQVMDTILEIKERHDAVKEIERNLKELHQVFMDMAVLVESQGEQLDDIENQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004834`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004834

Location Chr01:148462179-148463192 (+)

Description Similar to SYP121: Syntaxin-121

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g11820`	Vesicle trafficking protein that functions in the secretory pathway (By similarity).	Arabidopsis SNAREs SYP61 and SYP121 coordinate the trafficking of plasma membrane aquaporin PIP2;7 to modulate the cell membrane water permeability.2014 · DOI: 10.1105/tpc.114.127159
`At1g61290`	Vesicle trafficking protein that functions in the secretory pathway.	No verified direct reference in this release
`At1g11250`	Vesicle trafficking protein that functions in the secretory pathway.	No verified direct reference in this release
`At3g52400`	Vesicle trafficking protein that functions in the secretory pathway.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0787000`	Vesicle trafficking protein that functions in the secretory pathway.	OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast.2019 · DOI: 10.1104/pp.18.01013

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004834 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006612 protein targeting to membrane Biological Process

GO:0006886 intracellular protein transport Biological Process

GO:0006887 exocytosis Biological Process

GO:0006906 vesicle fusion Biological Process

GO:0006952 defense response Biological Process

GO:0009620 response to fungus Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0010148 transpiration Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0031348 negative regulation of defense response Biological Process

KEGG gene cross-reference

ath:AT1G11250

ath:AT1G61290

ath:AT3G11820

ath:AT3G52400

dosa:Os03g0787000

osa:4334356

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.554

Rank 1 · LXL04_004834 · OH-1004

Cytoplasm0.256

Rank 2 · LXL04_004834 · OH-1004

Lysosome / Vacuole0.172

Rank 3 · LXL04_004834 · OH-1004

Golgi apparatus0.140

Rank 4 · LXL04_004834 · OH-1004

Endoplasmic reticulum0.091

Rank 5 · LXL04_004834 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00804.32Syntaxin45-204 aa

PF05739.27SNARE218-294 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004834	`PF00804.32`	Syntaxin	45	204	1.9e-53	181.2
LXL04_004834	`PF05739.27`	SNARE	218	294	5.5e-27	94.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZSD4`	Arabidopsis thaliana	Syntaxin-121	67.155%	Swiss-Prot	strong database homology
`O64791`	Arabidopsis thaliana	Syntaxin-124	58.576%	Swiss-Prot	strong database homology
`Q9SXB0`	Arabidopsis thaliana	Syntaxin-125	59.589%	Swiss-Prot	strong database homology
`Q9SVC2`	Arabidopsis thaliana	Syntaxin-122	58.491%	Swiss-Prot	strong database homology
`Q6F3B4`	Oryza sativa subsp. japonica	Syntaxin-121	60.616%	Swiss-Prot	strong database homology

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