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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G099800
Reference: TK1151 Chr: Chr01 Coordinates: 25252882-25257983 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2977 bp · TkA01G099800|TK1151|cDNA

GTTAAATTCAGTCGAATTCTGTTCTTCCCTCACCATTTCTACTACCTGTATCTAAACCTTATTAAAAACCTAAATCGTTGTTGATTCAATAGCAGATTGTCGTTACCAATGATGCAATTGGCGCCAGAAATACTTCCATTCGACTGAACCACAATCGATTCATGCTCTATCGTATTGGACATCAACGCCAATCACTTCTTCGTCTTCCCTTTCCTTCGTTAAGTCCTTCAACCCTCATTTTAACTAAATCTTCATCATTA...

CDS

Download CDS FASTA

2505 bp · TkA01G099800|TK1151|CDS

ATGCTCTATCGTATTGGACATCAACGCCAATCACTTCTTCGTCTTCCCTTTCCTTCGTTAAGTCCTTCAACCCTCATTTTAACTAAATCTTCATCATTAATATCTGCGGAATCACTTGTACTAGAACCTTCAACCACTTTACCAGCTGCAAACGGTTCATTTCCTTCCGATATCCTCTCTCTGTTTAAAGTATTGGGTAGCTCAGGTGTCAAATTACTCGGCGCAAAACATCGCTTTAAAACCCTTGTCTCCAATCTGAG...

Protein

Download Protein FASTA

834 aa · TkA01G099800|TK1151|PROTEIN

MLYRIGHQRQSLLRLPFPSLSPSTLILTKSSSLISAESLVLEPSTTLPAANGSFPSDILSLFKVLGSSGVKLLGAKHRFKTLVSNLSSTQVDKIIDYLRSHDPDSAVELFELLKNEYGFKHSRVSHFVIAHILASQRRLKLLRSNFMQMLQEEGSGSGPLLCELLSVNFKDWKANAIVWDMLAFAYSRSNMVNDALSLIDTMKDFNIQPSILTYNSLLYNLRHSHTMWDAYNDIKEAGIQETKQTTSIIIDGLCKQSLLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G099800
TK1151 IDTkA01G099800
OH-1004 IDLXL04_004885
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G099800
LocationChr01:25252882-25257983 (+)
DescriptionSimilar to At1g13630: Putative pentatricopeptide repeat-containing protein At1g13630
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13630 Putative pentatricopeptide repeat-containing protein At1g13630. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G13630
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.793
Rank 1 · TkA01G099800 · TK1151
Plastid0.087
Rank 2 · TkA01G099800 · TK1151
Nucleus0.056
Rank 3 · TkA01G099800 · TK1151
Cytoplasm0.034
Rank 4 · TkA01G099800 · TK1151
Cell membrane0.010
Rank 5 · TkA01G099800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17241Retrotran_gag_481-123 aa
PF23276TPR_2491-135 aa
PF19189Mtf291-115 aa
PF13041PPR_297-115 aa
PF01535PPR97-115 aa
PF12854PPR_1104-111 aa
PF13041PPR_2176-219 aa
PF12854PPR_1177-203 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G099800PF17241Retrotran_gag_4811230.02415.1
TkA01G099800PF23276TPR_24911359e-40136.4
TkA01G099800PF19189Mtf2911150.0001822.0
TkA01G099800PF13041PPR_2971152.5e-135441.2
TkA01G099800PF01535PPR971152.4e-88285.1
TkA01G099800PF12854PPR_11041112.8e-110360.4
TkA01G099800PF13041PPR_21762192.5e-135441.2
TkA01G099800PF12854PPR_11772032.8e-110360.4
TkA01G099800PF01535PPR1782072.4e-88285.1
TkA01G099800PF23276TPR_241782659e-40136.4
TkA01G099800PF13812PPR_31832181.3e-55186.0
TkA01G099800PF12921ATP131842060.01515.9
TkA01G099800PF19189Mtf21852350.0001822.0
TkA01G099800PF17177PPR_long1873502.2e-32112.9
TkA01G099800PF17177PPR_long1922272.2e-32112.9
TkA01G099800PF29070MSC6_N1993323.6e-2383.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LMY5Arabidopsis thalianasp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g1363039.800%Swiss-ProtLow

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