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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_004885
Reference: OH-1004 Chr: Chr01 Coordinates: 149425811-149428422 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2505 bp · LXL04_004885|LXL04_004885|OH1004|cDNA

ATGCTCTATCGTATTGGACATCAACGCCAATCACTTCTTCGTCTTCCCTTTCCTTCGTTAAGTCCTTCAACCCTCATTTTAACTAAATCTTCATCATTAATATCTGCGGAATCACTTGTACTAGAACCTTCAACCACTTTACCAGCTGCAAACGGTTCATTTCCTTCCGATATCCTCTCTCTGTTTAAAGTATTGGGTAGCTCAGGTGTCAAATTACTCGGCGCAAAACATCGCTTTAAAACCCTTGTCTCCAATCTGAG...

CDS

Download CDS FASTA

2505 bp · LXL04_004885|LXL04_004885|OH1004|CDS

ATGCTCTATCGTATTGGACATCAACGCCAATCACTTCTTCGTCTTCCCTTTCCTTCGTTAAGTCCTTCAACCCTCATTTTAACTAAATCTTCATCATTAATATCTGCGGAATCACTTGTACTAGAACCTTCAACCACTTTACCAGCTGCAAACGGTTCATTTCCTTCCGATATCCTCTCTCTGTTTAAAGTATTGGGTAGCTCAGGTGTCAAATTACTCGGCGCAAAACATCGCTTTAAAACCCTTGTCTCCAATCTGAG...

Protein

Download Protein FASTA

834 aa · LXL04_004885|LXL04_004885|OH1004|PROTEIN

MLYRIGHQRQSLLRLPFPSLSPSTLILTKSSSLISAESLVLEPSTTLPAANGSFPSDILSLFKVLGSSGVKLLGAKHRFKTLVSNLSSTQVDKIIDYLRSHDPDSAVELFELLKNEYGFKHSRVSHFVIAHILASQRRLKLLRSNFMQMLQEEGSGSGPLLCELLSVNFKDWKANAIVWDMLAFAYSRSNMVNDALSLIDTMKDFNIQPSILTYNSLLYNLRHSHTMWDAYNDIKEAGIQETKQTTSIIIDGLCKQSLLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_004885
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_004885
LocationChr01:149425811-149428422 (-)
DescriptionSimilar to At1g13630: Putative pentatricopeptide repeat-containing protein At1g13630
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13630 Putative pentatricopeptide repeat-containing protein At1g13630. No verified direct reference in this release
At5g39710 Pentatricopeptide repeat-containing protein At5g39710. No verified direct reference in this release
At1g74580 Putative pentatricopeptide repeat-containing protein At1g74580. No verified direct reference in this release
At3g22470 Pentatricopeptide repeat-containing protein At3g22470, mitochondrial. No verified direct reference in this release
At1g12620 Pentatricopeptide repeat-containing protein At1g12620. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004885 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G13630
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.793
Rank 1 · LXL04_004885 · OH-1004
Plastid0.087
Rank 2 · LXL04_004885 · OH-1004
Nucleus0.056
Rank 3 · LXL04_004885 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_004885 · OH-1004
Cell membrane0.010
Rank 5 · LXL04_004885 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2176-219 aa
PF29070.1MSC6_N199-332 aa
PF13041.13PPR_2272-320 aa
PF13812.13PPR_3300-350 aa
PF12854.14PPR_1304-335 aa
PF01535.27PPR310-340 aa
PF13041.13PPR_2312-354 aa
PF12854.14PPR_1374-407 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_004885PF13041.13PPR_21762192.5e-135441.2
LXL04_004885PF29070.1MSC6_N1993323.6e-2383.0
LXL04_004885PF13041.13PPR_22723202.5e-135441.2
LXL04_004885PF13812.13PPR_33003501.3e-55186.0
LXL04_004885PF12854.14PPR_13043352.8e-110360.4
LXL04_004885PF01535.27PPR3103402.4e-88285.1
LXL04_004885PF13041.13PPR_23123542.5e-135441.2
LXL04_004885PF12854.14PPR_13744072.8e-110360.4
LXL04_004885PF13041.13PPR_23784272.5e-135441.2
LXL04_004885PF01535.27PPR3814102.4e-88285.1
LXL04_004885PF17177.11PPR_long3974992.2e-32112.9
LXL04_004885PF12854.14PPR_14104422.8e-110360.4
LXL04_004885PF01535.27PPR4164452.4e-88285.1
LXL04_004885PF13041.13PPR_24214622.5e-135441.2
LXL04_004885PF13812.13PPR_34374921.3e-55186.0
LXL04_004885PF12854.14PPR_14444762.8e-110360.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LMY5Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g1363045.006%Swiss-Protmoderate database homology
Q9FIX3Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g3971028.686%Swiss-Protweak database homology
Q9CA58Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At1g7458026.629%Swiss-Protweak database homology
Q6NQ83Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g22470, mitochondrial28.808%Swiss-Protweak database homology
Q9ASZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g1262028.827%Swiss-Protweak database homology

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