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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G099090
Reference: TK1151 Chr: Chr01 Coordinates: 25073553-25078812 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4551 bp · TkA01G099090|TK1151|cDNA

CGAGAGAGGTTCAATATGGTTCTAGTTATAATTACGGACTTTAGAGACCACGAAATCTCTTATCATATTCCACATGCCTATGATCTTATGCCATTCCCAACCAATTTGTTTCTTGACATGGATATCCTAAAAAGTTACGAAAGATGAACCTATAGGAATACATATCCATTTGACTGAAAGGGAGTCTTCGTCGGTGAGGATTCTACATACATGGGTTACCATTAAGAATCCAGAAGGAAGTGATTATGATGCCGAGTCTA...

CDS

Download CDS FASTA

2334 bp · TkA01G099090|TK1151|CDS

ATGGCTAGAACTTCTTATTATTGGCAACCAGCAGTTGTACTCCTTGCTCTGTTTCTTGTACCAATTCGAAGCTCTCATCACCATAACATCTCTCAAGAACAAACCCTTTTGAAAATCCAACACCTTCTGTATTATCCTGTCGTTCTTAGTAGCTGGAACAACGCCACTGATTTTTGTAACACTGTTCAAAGTTCATCAGTAACAGTGATTTGCTATGAAGGCGTAATAACACAGCTTCACATAATCAATGGCGATAAAAC...

Protein

Download Protein FASTA

777 aa · TkA01G099090|TK1151|PROTEIN

MARTSYYWQPAVVLLALFLVPIRSSHHHNISQEQTLLKIQHLLYYPVVLSSWNNATDFCNTVQSSSVTVICYEGVITQLHIINGDKTPPLPKDFSIDTFVTTLINLRSLKVLKLVSLGLWGQVPAKISHLSSLEILNVTSNHFSGEIPPEITYLTDLQSLVLDDNNFTGWIPTRIGFLSRLSVLSMKNNSLNGLLPDSLGNLVDLRVLALSHNNFSGESPDLRDLKNLQVLELGGNSLGLEFPRVPSRIISIVLRENKFT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G099090
TK1151 IDTkA01G099090
OH-1004 IDLXL04_011496
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)41.400
Protein coverage (%)TK1151 96.654 / OH-1004 98.042
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G099090
LocationChr01:25073553-25078812 (+)
DescriptionSimilar to At1g14390: Probable LRR receptor-like serine/threonine-protein kinase At1g14390
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g03770 Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770. No verified direct reference in this release
At1g14390 Probable LRR receptor-like serine/threonine-protein kinase At1g14390. No verified direct reference in this release
At2g02780 Probable LRR receptor-like serine/threonine-protein kinase At2g02780. No verified direct reference in this release
At2g21480 Probable receptor-like protein kinase At2g21480. No verified direct reference in this release
At4g39110 Probable receptor-like protein kinase At4g39110. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011496 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009416 response to light stimulus Biological Process
GO:0009729 detection of brassinosteroid stimulus Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0045088 regulation of innate immune response Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005496 steroid binding Molecular Function
KEGG gene cross-reference
ath:AT1G14390
ath:AT2G02780
ath:AT3G03770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.824
Rank 1 · TkA01G099090 · TK1151
Endoplasmic reticulum0.077
Rank 2 · TkA01G099090 · TK1151
Cytoplasm0.072
Rank 3 · TkA01G099090 · TK1151
Nucleus0.057
Rank 4 · TkA01G099090 · TK1151
Lysosome / Vacuole0.040
Rank 5 · TkA01G099090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_231-60 aa
PF23598LRR_14101-311 aa
PF12799LRR_4103-114 aa
PF13855LRR_8104-143 aa
PF25019LRR_R13L1-DRL21105-139 aa
PF00560LRR_1108-130 aa
PF24758LRR_At5g56370111-164 aa
PF25019LRR_R13L1-DRL21128-188 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G099090PF08263LRRNT_231600.0714.1
TkA01G099090PF23598LRR_141013111.3e-1557.7
TkA01G099090PF12799LRR_41031142.5e-0834.6
TkA01G099090PF13855LRR_81041431e-1351.5
TkA01G099090PF25019LRR_R13L1-DRL211051390.01615.9
TkA01G099090PF00560LRR_11081304.7e-1759.1
TkA01G099090PF24758LRR_At5g563701111640.1212.8
TkA01G099090PF25019LRR_R13L1-DRL211281880.01615.9
TkA01G099090PF13516LRR_61291460.000321.3
TkA01G099090PF00560LRR_11321544.7e-1759.1
TkA01G099090PF12799LRR_41321662.5e-0834.6
TkA01G099090PF13516LRR_61551680.000321.3
TkA01G099090PF00560LRR_11571774.7e-1759.1
TkA01G099090PF13855LRR_81572151e-1351.5
TkA01G099090PF12799LRR_41571932.5e-0834.6
TkA01G099090PF12799LRR_41802212.5e-0834.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8LFN2Arabidopsis thalianasp|Q8LFN2|Y3037_ARATH Probable inactive leucine-rich repeat receptor-like protein kinase At3g0377059.000%Swiss-ProtHigh
Q9M9S4Arabidopsis thalianasp|Q9M9S4|Y1143_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g1439040.100%Swiss-ProtMedium
C0LGJ9Arabidopsis thalianasp|C0LGJ9|Y2278_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g0278036.900%Swiss-ProtMedium
Q9SJT0Arabidopsis thalianasp|Q9SJT0|Y2214_ARATH Probable receptor-like protein kinase At2g2148034.700%Swiss-ProtLow
Q9T020Arabidopsis thalianasp|Q9T020|Y4391_ARATH Probable receptor-like protein kinase At4g3911033.200%Swiss-ProtLow

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