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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G078410
Reference: TK1151 Chr: Chr01 Coordinates: 20031513-20036035 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1981 bp · TkA01G078410|TK1151|cDNA

TTGCTAACCGAAGTCCTTGCAAAAGTAAAAACCTAGCCACATACGGAAAGGAGGAGTCGTGTTTAGAAAATATAACTGTCATTTGTTTTCCGGATCATTGTGGACAAAACAAGCGAGAGATTAACCCCAAATCAATCCCCGATCTCAAACTCACCACACACATAAATACACTCTAGATTGGACGATACTAAGTGAAACGCCAAATCTCTTCAATGCCGAGCGATCAAGCCGAGCTCAATTCCGAACAGGTTCTGAGGAGG...

CDS

Download CDS FASTA

1362 bp · TkA01G078410|TK1151|CDS

ATGCCGAGCGATCAAGCCGAGCTCAATTCCGAACAGGTTCTGAGGAGGGATATCCCATGGGAGACCTACATGACAACAAAGCTGATCACAGGAACATCCCTTCAGCTATTAAGGCGCTATGACAAAAAGACTGAAAATGACAGGGCACAACTGCTTGACAATGATGGTCCGTCTTATATTCATGTTTTTATTAGCATCTTGCGCGACATACAGAAAGAGGACACAGTTGAATACGTGATGGCTTTAATCGATGAGTTGCT...

Protein

Download Protein FASTA

453 aa · TkA01G078410|TK1151|PROTEIN

MPSDQAELNSEQVLRRDIPWETYMTTKLITGTSLQLLRRYDKKTENDRAQLLDNDGPSYIHVFISILRDIQKEDTVEYVMALIDELLTASPKRAKLFHDKSLENEDIYEPFLRLLWKGSWFIQEKSSKILTLIVSARPKQSGHSANGQSTDSKKKIISSADVLKGLVDWLCIQLKKPSHPTRSIPTSVNCLSTLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRALPRLLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G078410
TK1151 IDTkA01G078410
OH-1004 IDLXL04_005171
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G078410
LocationChr01:20031513-20036035 (-)
DescriptionSimilar to VHA-H: V-type proton ATPase subunit H
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g42050 Subunit of the peripheral V1 complex of vacuolar ATPase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0549700 Subunit of the peripheral V1 complex of vacuolar ATPase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005171 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006897 endocytosis Biological Process
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005765 lysosomal membrane Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT3G42050
ddi:DDB_G0274553
mmu:108664
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.573
Rank 1 · TkA01G078410 · TK1151
Nucleus0.248
Rank 2 · TkA01G078410 · TK1151
Golgi apparatus0.204
Rank 3 · TkA01G078410 · TK1151
Lysosome / Vacuole0.161
Rank 4 · TkA01G078410 · TK1151
Cell membrane0.106
Rank 5 · TkA01G078410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03224V-ATPase_H_N8-324 aa
PF25598ARM_PUB34-225 aa
PF04078Rcd147-196 aa
PF13646HEAT_257-83 aa
PF11698V-ATPase_H_C59-85 aa
PF24768ARM_ARMC560-102 aa
PF23654ARM_LIN_2nd61-86 aa
PF08216CTNNBL72-87 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G078410PF03224V-ATPase_H_N83244.2e-82276.8
TkA01G078410PF25598ARM_PUB342258.2e-0522.9
TkA01G078410PF04078Rcd1471960.003917.3
TkA01G078410PF13646HEAT_257830.04414.8
TkA01G078410PF11698V-ATPase_H_C59851.2e-40139.0
TkA01G078410PF24768ARM_ARMC5601020.0002421.3
TkA01G078410PF23654ARM_LIN_2nd61860.007516.6
TkA01G078410PF08216CTNNBL72870.001118.2
TkA01G078410PF04826Arm_21101310.002518.1
TkA01G078410PF24768ARM_ARMC51582500.0002421.3
TkA01G078410PF23654ARM_LIN_2nd1831950.007516.6
TkA01G078410PF04078Rcd11852750.003917.3
TkA01G078410PF13646HEAT_21862030.04414.8
TkA01G078410PF30196WRM1_C1872790.1112.2
TkA01G078410PF08216CTNNBL1882220.001118.2
TkA01G078410PF00514Arm2052271.8e-0525.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LX65Arabidopsis thalianasp|Q9LX65|VATH_ARATH V-type proton ATPase subunit H77.700%Swiss-ProtHigh
Q84ZC0Oryza sativa subsp. japonicasp|Q84ZC0|VATH_ORYSJ Probable V-type proton ATPase subunit H73.100%Swiss-ProtHigh

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