Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1362 bp · LXL04_005171|LXL04_005171|OH1004|cDNA
ATGCCGAGCGATCAAGCCGAGCTCAATTCCGAACAGGTTCTGAGGAGGGATATCCCATGGGAGACCTACATGACAACAAAGCTGATCACAGGAACATCCCTTCAGCTATTAAGGCGCTATGACAAAAAGACTGAAAATGACAGGGCACAACTGCTTGACAATGATGGTCCGTCttatattcatgtttttattaGCATCTTGCGCGACATACAGAAAGAGGACACAGTTGAATATGTGATGGCTTTAATCGATGAGTTGCT...
1362 bp · LXL04_005171|LXL04_005171|OH1004|CDS
ATGCCGAGCGATCAAGCCGAGCTCAATTCCGAACAGGTTCTGAGGAGGGATATCCCATGGGAGACCTACATGACAACAAAGCTGATCACAGGAACATCCCTTCAGCTATTAAGGCGCTATGACAAAAAGACTGAAAATGACAGGGCACAACTGCTTGACAATGATGGTCCGTCTTATATTCATGTTTTTATTAGCATCTTGCGCGACATACAGAAAGAGGACACAGTTGAATATGTGATGGCTTTAATCGATGAGTTGCT...
Protein
Download Protein FASTA453 aa · LXL04_005171|LXL04_005171|OH1004|PROTEIN
MPSDQAELNSEQVLRRDIPWETYMTTKLITGTSLQLLRRYDKKTENDRAQLLDNDGPSYIHVFISILRDIQKEDTVEYVMALIDELLTASPKRAKLFHDKSLENEDIYEPFLRLLWKGSWFIQEKSSKILTLIVSARPKQSGHSANGQSTDSKKKIISSADVLKGLVDWLCIQLKKPSHPTRSIPTSVNCLSTLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRALPRLLE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_005171 |
|---|---|
| TK1151 ID | TkA01G078410 |
| OH-1004 ID | LXL04_005171 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_005171 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:157091377-157095282 (+) | ||||||||||||
| Description | Similar to VHA-H: V-type proton ATPase subunit H | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006897 endocytosis Biological Process GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain Cellular Component GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005773 vacuole Cellular Component GO:0005774 vacuolar membrane Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT3G42050 ddi:DDB_G0274553 mmu:108664 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03224.21V-ATPase_H_N8-324 aaPF11698.15V-ATPase_H_C330-442 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_005171 | PF03224.21 | V-ATPase_H_N | 8 | 324 | 4.2e-82 | 276.8 |
| LXL04_005171 | PF11698.15 | V-ATPase_H_C | 330 | 442 | 1.2e-40 | 139.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.