TkA01G053350 | RubberDandelionOmics

Gene overview

TkA01G053350

Reference: TK1151 Chr: Chr01 Coordinates: 13797935-13808308 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

444 bp · TkA01G053350|TK1151|cDNA

ATGCATGATGGACTGCCAAATCGATTGAATTTATCTAAAAGAGGAATGGAGATACAATCGTTAAATTGTTTTGTTTGCAACTTTGGTGGCGAGAGCGTTAATCACATTTTTCTTCGTTGTGAGGTGGCGACGACTGTGTGGGTTTTGGTGGAAAGATGGCGCGGTATAATTTGGCCTAATGTTTATTTTATTAGAGAATGGTTATCTTGGGTGGATGATCAAGATATGATGCCATTCGGAAAGTTAAAAGTTGAAGTTAT...

CDS

Download CDS FASTA

444 bp · TkA01G053350|TK1151|CDS

ATGCATGATGGACTGCCAAATCGATTGAATTTATCTAAAAGAGGAATGGAGATACAATCGTTAAATTGTTTTGTTTGCAACTTTGGTGGCGAGAGCGTTAATCACATTTTTCTTCGTTGTGAGGTGGCGACGACTGTGTGGGTTTTGGTGGAAAGATGGCGCGGTATAATTTGGCCTAATGTTTATTTTATTAGAGAATGGTTATCTTGGGTGGATGATCAAGATATGATGCCATTCGGAAAGTTAAAAGTTGAAGTTAT...

Protein

Download Protein FASTA

147 aa · TkA01G053350|TK1151|PROTEIN

MHDGLPNRLNLSKRGMEIQSLNCFVCNFGGESVNHIFLRCEVATTVWVLVERWRGIIWPNVYFIREWLSWVDDQDMMPFGKLKVEVIEATTTWILWRFRNSHVFKGDDSWMRKDFIFDSIILKYFFWLKNRASNSVINRNAWIICPM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G053350`
TK1151 ID	TkA01G053350
OH-1004 ID	LXL04_033013
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	44.400
Protein coverage (%)	TK1151 97.279 / OH-1004 20.257 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G053350`
Location	Chr01:13797935-13808308 (-)
Description	Similar to GLXI: Lactoylglutathione lyase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_033013` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009414 response to water deprivation Biological Process GO:0009651 response to salt stress Biological Process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione Biological Process GO:0005576 extracellular region Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0004462 lactoylglutathione lyase activity Molecular Function GO:0019904 protein domain specific binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	ath:AT1G08110 cam:101505694 gmx:547667 sly:544161 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.319

Rank 1 · TkA01G053350 · TK1151

Nucleus0.187

Rank 2 · TkA01G053350 · TK1151

Cell membrane0.183

Rank 3 · TkA01G053350 · TK1151

Endoplasmic reticulum0.164

Rank 4 · TkA01G053350 · TK1151

Golgi apparatus0.067

Rank 5 · TkA01G053350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13966zf-RVT2-47 aa

PF13966zf-RVT92-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G053350	`PF13966`	zf-RVT	2	47	1.3e-08	36.0
TkA01G053350	`PF13966`	zf-RVT	92	128	1.3e-08	36.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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