TkA01G053240 | RubberDandelionOmics

Gene overview

TkA01G053240

Reference: TK1151 Chr: Chr01 Coordinates: 13756458-13757862 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

810 bp · TkA01G053240|TK1151|cDNA

TAATATCTATTCTAAATTCATGGGAGTTTTCAGGATGATGAGTACAAGAACATAATGATGAAGGTTGATGCTGCTAAAGCTAAGTTGAAGGGTAGAATGGACAATTTTAAGGTTGGTATTGCTTATACAGTTAATAAATGCAAGGAGTGTTTTATTATGTTCCTATTTGTGTGAATTGCAGCTGGAGCTAAGAGGTATGACTAGTGAGTGAGGCCCTGGAAGAGGATTAATTTGATAAGCAAATCAATTAGATGGACATA...

CDS

Download CDS FASTA

369 bp · TkA01G053240|TK1151|CDS

ATGGATGCATTACCAGGTTTTAAAGGTGGAAATGCTGATTATGCCATGGATTTGCACCAGAAGGAACAGCTTCATGATCACAATGTTTCAATGATGCAGTCTCCACATTTCTCCATGGGGAGGTCTTCGGGGTTCAACTTGGGAGGGGCATTTTCGTCACATCGTTCACAACAACAAACTAGCAGTGTCTCATCTTTTGCACCATCAAACAATCAAGAGCTTCACCATATGGATATGTTCCAACAAGGATCACATTCATC...

Protein

Download Protein FASTA

122 aa · TkA01G053240|TK1151|PROTEIN

MDALPGFKGGNADYAMDLHQKEQLHDHNVSMMQSPHFSMGRSSGFNLGGAFSSHRSQQQTSSVSSFAPSNNQELHHMDMFQQGSHSSFHSQPEWELESESLMPMFMALVCQLWSPLKTTCLK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G053240`
TK1151 ID	TkA01G053240
OH-1004 ID	LXL04_023930
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.700
Protein coverage (%)	TK1151 100.000 / OH-1004 33.506 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G053240

Location Chr01:13756458-13757862 (-)

Description Similar to ACA5: Calcium-transporting ATPase 5, plasma membrane-type

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59710`	Transcriptional regulator required for Agrobacterium-mediated stable genetic transformation by T-DNA integration in host genome, but not for T-DNA transient expression.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_023930 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009555 pollen development Biological Process

GO:0009567 double fertilization forming a zygote and endosperm Biological Process

GO:0009624 response to nematode Biological Process

GO:0051480 regulation of cytosolic calcium ion concentration Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0005388 P-type calcium transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G21180

ath:AT3G63380

ath:AT4G29900

ath:AT5G57110

dosa:Os04g0605500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.875

Rank 1 · TkA01G053240 · TK1151

Cytoplasm0.236

Rank 2 · TkA01G053240 · TK1151

Endoplasmic reticulum0.047

Rank 3 · TkA01G053240 · TK1151

Cell membrane0.042

Rank 4 · TkA01G053240 · TK1151

Lysosome / Vacuole0.018

Rank 5 · TkA01G053240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14925MAP10_C20-76 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G053240	`PF14925`	MAP10_C	20	76	0.046	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FPW4`	Arabidopsis thaliana	sp\|Q9FPW4\|VIP2_ARATH Probable NOT transcription complex subunit VIP2	69.800%	Swiss-Prot	Medium

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