TkA01G040010 | RubberDandelionOmics

Gene overview

TkA01G040010

Reference: TK1151 Chr: Chr01 Coordinates: 10323935-10324891 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

540 bp · TkA01G040010|TK1151|cDNA

ATGTATACTGGCAATCTGCTAGGGTTAGGTCTGACCATCTCTTATTATTCATTCGGCGGGTCAAGTTTCATCATAAAAAAGAAAGGTCTCGAAAGGGTTGTTGCTTTCGGTACTGGAGCGAGCCCAGGAGGATATGGTTATATGGCGGATTGGCATGTTGACAAATTTACAGTGGTTGTTGGAGAATTTGCCAATTTTGTAGTTTACATATATGCTCCTGCAGTGCTTCTGAATCCAGTAGGAGCATTGAGCATAAACGT...

CDS

Download CDS FASTA

540 bp · TkA01G040010|TK1151|CDS

ATGTATACTGGCAATCTGCTAGGGTTAGGTCTGACCATCTCTTATTATTCATTCGGCGGGTCAAGTTTCATCATAAAAAAGAAAGGTCTCGAAAGGGTTGTTGCTTTCGGTACTGGAGCGAGCCCAGGAGGATATGGTTATATGGCGGATTGGCATGTTGACAAATTTACAGTGGTTGTTGGAGAATTTGCCAATTTTGTAGTTTACATATATGCTCCTGCAGTGCTTCTGAATCCAGTAGGAGCATTGAGCATAAACGT...

Protein

Download Protein FASTA

179 aa · TkA01G040010|TK1151|PROTEIN

MYTGNLLGLGLTISYYSFGGSSFIIKKKGLERVVAFGTGASPGGYGYMADWHVDKFTVVVGEFANFVVYIYAPAVLLNPVGALSINVSVVLAHFLLNEKLRKVGILGCMLYIMGSTVILHVPAEHSWLRIIDASALFLLDIKCRVLVWPDYLVDISATESERFFTKLIEKQVFSFSVAF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G040010`
TK1151 ID	TkA01G040010
OH-1004 ID	LXL04_008632
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	82.100
Protein coverage (%)	TK1151 67.598 / OH-1004 97.619 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G040010

Location Chr01:10323935-10324891 (+)

Description Similar to At4g38730: Probable magnesium transporter NIPA7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21120`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g38730`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At3g23870`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g13800`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At1g34470`	Acts as a Mg(2+) transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008632 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015693 magnesium ion transport Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005769 early endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G34470

ath:AT1G71900

ath:AT2G21120

ath:AT4G09640

ath:AT4G38730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.520

Rank 1 · TkA01G040010 · TK1151

Golgi apparatus0.186

Rank 2 · TkA01G040010 · TK1151

Cell membrane0.140

Rank 3 · TkA01G040010 · TK1151

Lysosome / Vacuole0.122

Rank 4 · TkA01G040010 · TK1151

Cytoplasm0.120

Rank 5 · TkA01G040010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05653Mg_trans_NIPA5-126 aa

PF00892EamA57-119 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G040010	`PF05653`	Mg_trans_NIPA	5	126	5.9e-36	124.9
TkA01G040010	`PF00892`	EamA	57	119	0.0055	17.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GWX2`	Arabidopsis thaliana	sp\|Q8GWX2\|NIPA6_ARATH Probable magnesium transporter NIPA6	56.600%	Swiss-Prot	High
`Q8GYS1`	Arabidopsis thaliana	sp\|Q8GYS1\|NIPA7_ARATH Probable magnesium transporter NIPA7	54.300%	Swiss-Prot	High
`Q9LIR9`	Arabidopsis thaliana	sp\|Q9LIR9\|NIPA1_ARATH Probable magnesium transporter NIPA1	46.800%	Swiss-Prot	Medium
`B3LFA3`	Arabidopsis thaliana	sp\|B3LFA3\|NIPA2_ARATH Probable magnesium transporter NIPA2	52.400%	Swiss-Prot	Medium
`Q9LNK7`	Arabidopsis thaliana	sp\|Q9LNK7\|NIPA3_ARATH Probable magnesium transporter NIPA3	50.000%	Swiss-Prot	Medium

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