LXL04_008632 | RubberDandelionOmics

Gene overview

LXL04_008632

Reference: OH-1004 Chr: Chr02 Coordinates: 104638862-104639693 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

381 bp · LXL04_008632|LXL04_008632|OH1004|cDNA

ATGTATACTGGCAATCTGCTAGGGTTCGGTCTGACCATCTCTTATTATTTATTCAGCGGATCAAGTTTCATCATAAAAAAGAAAGGTCTCGAAAGGGTTGTTGCTTTCGGTACTCGAGCGAGCCCAGGAGGATATGGTTATATGCTAGAACCACTATGGCGGATTGGCATGTTGACAATGGTTGTTGGAGAAATTGCCAATTTTGTAGCTTACATATATGCTCCTGCAGTGCTTCTGACTCCAGTAGGAGCATTGAGCAT...

CDS

Download CDS FASTA

381 bp · LXL04_008632|LXL04_008632|OH1004|CDS

ATGTATACTGGCAATCTGCTAGGGTTCGGTCTGACCATCTCTTATTATTTATTCAGCGGATCAAGTTTCATCATAAAAAAGAAAGGTCTCGAAAGGGTTGTTGCTTTCGGTACTCGAGCGAGCCCAGGAGGATATGGTTATATGCTAGAACCACTATGGCGGATTGGCATGTTGACAATGGTTGTTGGAGAAATTGCCAATTTTGTAGCTTACATATATGCTCCTGCAGTGCTTCTGACTCCAGTAGGAGCATTGAGCAT...

Protein

Download Protein FASTA

126 aa · LXL04_008632|LXL04_008632|OH1004|PROTEIN

MYTGNLLGFGLTISYYLFSGSSFIIKKKGLERVVAFGTRASPGGYGYMLEPLWRIGMLTMVVGEIANFVAYIYAPAVLLTPVGALSIKASVVHAHFLLNEKLRKVGILGCMLCIMGSTVILHICSC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_008632`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_008632

Location Chr02:104638862-104639693 (+)

Description Similar to At4g38730: Probable magnesium transporter NIPA7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g38730`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At2g21120`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At1g34470`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At1g71900`	Acts as a Mg(2+) transporter.	No verified direct reference in this release
`At4g09640`	Acts as a Mg(2+) transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_008632 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015693 magnesium ion transport Biological Process

GO:0051607 defense response to virus Biological Process

GO:0005769 early endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0015095 magnesium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G34470

ath:AT1G71900

ath:AT2G21120

ath:AT4G09640

ath:AT4G38730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.300

Rank 1 · LXL04_008632 · OH-1004

Endoplasmic reticulum0.218

Rank 2 · LXL04_008632 · OH-1004

Golgi apparatus0.209

Rank 3 · LXL04_008632 · OH-1004

Cell membrane0.197

Rank 4 · LXL04_008632 · OH-1004

Cytoplasm0.139

Rank 5 · LXL04_008632 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05653.21Mg_trans_NIPA5-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_008632	`PF05653.21`	Mg_trans_NIPA	5	121	3.4e-45	155.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYS1`	Arabidopsis thaliana	Probable magnesium transporter NIPA7	62.810%	Swiss-Prot	strong database homology
`Q8GWX2`	Arabidopsis thaliana	Probable magnesium transporter NIPA6	65.289%	Swiss-Prot	strong database homology
`Q9LNK7`	Arabidopsis thaliana	Probable magnesium transporter NIPA3	58.537%	Swiss-Prot	strong database homology
`Q94AH3`	Arabidopsis thaliana	Probable magnesium transporter NIPA4	57.724%	Swiss-Prot	strong database homology
`F4JKQ7`	Arabidopsis thaliana	Probable magnesium transporter NIPA5	59.350%	Swiss-Prot	strong database homology

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