TkA01G020480 | RubberDandelionOmics

Gene overview

TkA01G020480

Reference: TK1151 Chr: Chr01 Coordinates: 5272219-5280048 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1812 bp · TkA01G020480|TK1151|cDNA

ATGGATCCTGATTCCATTGTCAGTAGCCTTAACGAGGTGATATATAAAGATAGGAAAATCGCAGCCAATCAGGCAAAACACGCTAAACCCAGGCCGGTGAAAGCTCCGATCAAAATAAAGGAGAACACCGCCCCTAATACCTTCCGCGCAGCTACCAGAGGTACAGGATCATTCGCAGACGTAGCAAAAGGGATCAATCAAAGGGTGGCTGACCCAGTGATTAAATTGGATACGATGCAAGAAATCCAAACTTGGGTTAG...

CDS

Download CDS FASTA

1812 bp · TkA01G020480|TK1151|CDS

ATGGATCCTGATTCCATTGTCAGTAGCCTTAACGAGGTGATATATAAAGATAGGAAAATCGCAGCCAATCAGGCAAAACACGCTAAACCCAGGCCGGTGAAAGCTCCGATCAAAATAAAGGAGAACACCGCCCCTAATACCTTCCGCGCAGCTACCAGAGGTACAGGATCATTCGCAGACGTAGCAAAAGGGATCAATCAAAGGGTGGCTGACCCAGTGATTAAATTGGATACGATGCAAGAAATCCAAACTTGGGTTAG...

Protein

Download Protein FASTA

603 aa · TkA01G020480|TK1151|PROTEIN

MDPDSIVSSLNEVIYKDRKIAANQAKHAKPRPVKAPIKIKENTAPNTFRAATRGTGSFADVAKGINQRVADPVIKLDTMQEIQTWVRAVLVGEARNLDTLCNFATLMEMEGYNISECKYGGGMQIVVKFKSERDADIFKANRGIWLKWFVRVDPLSKAEPFPGRITWTKIVGVPFTAWDEANMAAIAGKFGRVLVDVTNAWNSFSGEGNDDRYLADKLRFVKQAIKEWRHREYDRENKELADLKVKVDNIELQAEERMLT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G020480`
TK1151 ID	TkA01G020480
OH-1004 ID	LXL04_005671
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	40.400
Protein coverage (%)	TK1151 63.682 / OH-1004 29.485 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA01G020480`
Location	Chr01:5272219-5280048 (+)
Description	Similar to KAT3: Potassium channel KAT3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_005671` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009624 response to nematode Biological Process GO:0071805 potassium ion transmembrane transport Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0034702 monoatomic ion channel complex Cellular Component GO:0005249 voltage-gated potassium channel activity Molecular Function
KEGG gene cross-reference	ath:AT4G32650 dosa:Os01g0648000 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.593

Rank 1 · TkA01G020480 · TK1151

Nucleus0.258

Rank 2 · TkA01G020480 · TK1151

Cell membrane0.217

Rank 3 · TkA01G020480 · TK1151

Golgi apparatus0.053

Rank 4 · TkA01G020480 · TK1151

Endoplasmic reticulum0.044

Rank 5 · TkA01G020480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19771DUF6257173-189 aa

PF19771DUF6257237-258 aa

PF13966zf-RVT253-268 aa

PF13966zf-RVT291-317 aa

PF19771DUF6257344-351 aa

PF13966zf-RVT420-495 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G020480	`PF19771`	DUF6257	173	189	0.3	11.6
TkA01G020480	`PF19771`	DUF6257	237	258	0.3	11.6
TkA01G020480	`PF13966`	zf-RVT	253	268	7.2e-14	52.9
TkA01G020480	`PF13966`	zf-RVT	291	317	7.2e-14	52.9
TkA01G020480	`PF19771`	DUF6257	344	351	0.3	11.6
TkA01G020480	`PF13966`	zf-RVT	420	495	7.2e-14	52.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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