LXL04_038706 | RubberDandelionOmics

Gene overview

LXL04_038706

Reference: OH-1004 Chr: Chr09 Coordinates: 48419392-48420672 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

774 bp · LXL04_038706|LXL04_038706|OH1004|cDNA

ATGGCGTCGTCGAAGGTGATGGCATCATCATCGCCGGCGAATCAGGATCTACAACGTCATCAGGCATTCGCGCATACCGTCGGTCTCACCGATCACAACAACAATTTAATTTCTATGAATATGGACGATCTCGTAAAGAACATTTACGAGGATTCGAGTCAGGCGCCGGGGAGTTTTCCCGCCAGTGGTGGAAAGACGATGGATGAAAGTTGGAAGGAGATCGTGGATGGAAGCGGTGGTGATCCAGAAATGACTCTAGA...

CDS

Download CDS FASTA

774 bp · LXL04_038706|LXL04_038706|OH1004|CDS

ATGGCGTCGTCGAAGGTGATGGCATCATCATCGCCGGCGAATCAGGATCTACAACGTCATCAGGCATTCGCGCATACCGTCGGTCTCACCGATCACAACAACAATTTAATTTCTATGAATATGGACGATCTCGTAAAGAACATTTACGAGGATTCGAGTCAGGCGCCGGGGAGTTTTCCCGCCAGTGGTGGAAAGACGATGGATGAAAGTTGGAAGGAGATCGTGGATGGAAGCGGTGGTGATCCAGAAATGACTCTAGA...

Protein

Download Protein FASTA

257 aa · LXL04_038706|LXL04_038706|OH1004|PROTEIN

MASSKVMASSSPANQDLQRHQAFAHTVGLTDHNNNLISMNMDDLVKNIYEDSSQAPGSFPASGGKTMDESWKEIVDGSGGDPEMTLEDFLTKAGAVREEDVVKLPPVSASAVVSEYSGVVDPIICAGAGAVDAASFQVMPQQHMQFGSAIGTSAGTSGGVRGKRKVVVEDPPVDKATQQKQRRMIKNRESAARSRERKQAYTVELEALVTQLEEEHARLLKEVDELNKERLKQLMKNLVPVLEKRRPPKVLRRTNSM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_038706`
TK1151 ID	TkA04G457740
OH-1004 ID	LXL04_038706
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_038706

Location Chr09:48419392-48420672 (-)

Description Similar to BZIP12: bZIP transcription factor 12

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g03970`	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter.	Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein.1994 · DOI: 10.1073/pnas.91.7.2522
`At2g36270`	Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth.	A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis.2001 · DOI: 10.1073/pnas.081594298 Regulation of Arabidopsis thaliana Em genes: role of ABI5.2002 · DOI: 10.1046/j.1365-313x.2002.01295.x The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis.2002 · DOI: 10.1105/tpc.000869 Regulation and role of the Arabidopsis abscisic acid-insensitive 5 gene in abscisic acid, sugar, and stress response.2002 · DOI: 10.1104/pp.005793 ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination.2002 · DOI: 10.1046/j.1365-313x.2002.01430.x Mitogen-activated protein kinase signaling in postgermination arrest of development by abscisic acid.2002 · DOI: 10.1073/pnas.242607499 Interactions of abscisic acid and sugar signalling in the regulation of leaf senescence.2004 · DOI: 10.1007/s00425-004-1279-5 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5 Monomerization of abscisic acid receptors through CARKs-mediated phosphorylation.2022 · DOI: 10.1111/nph.18149
`At3g56850`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0867300`	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro.	The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.2010 · DOI: 10.1007/s11103-009-9592-9 Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L.2013 · DOI: 10.1007/s00425-013-1853-9
`Os06g0211200`	Transcription factor involved in abscisic acid (ABA) signaling pathway.	Rice ABI5-Like1 regulates abscisic acid and auxin responses by affecting the expression of ABRE-containing genes.2011 · DOI: 10.1104/pp.111.173427 Constitutive activation of transcription factor OsbZIP46 improves drought tolerance in rice.2012 · DOI: 10.1104/pp.111.190389 Functional characterization and reconstitution of ABA signaling components using transient gene expression in rice protoplasts.2015 · DOI: 10.3389/fpls.2015.00614 MODD Mediates Deactivation and Degradation of OsbZIP46 to Negatively Regulate ABA Signaling and Drought Resistance in Rice.2016 · DOI: 10.1105/tpc.16.00171

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_038706 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009739 response to gibberellin Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0010182 sugar mediated signaling pathway Biological Process

GO:0010187 negative regulation of seed germination Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

KEGG gene cross-reference

ath:AT1G03970

ath:AT2G36270

ath:AT3G56850

dosa:Os01g0867300

dosa:Os06g0211200

osa:4325078

osa:4340462

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.973

Rank 1 · LXL04_038706 · OH-1004

Cytoplasm0.093

Rank 2 · LXL04_038706 · OH-1004

Cell membrane0.026

Rank 3 · LXL04_038706 · OH-1004

Endoplasmic reticulum0.016

Rank 4 · LXL04_038706 · OH-1004

Plastid0.009

Rank 5 · LXL04_038706 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00170.27bZIP_1177-237 aa

PF07716.21bZIP_2178-229 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_038706	`PF00170.27`	bZIP_1	177	237	2.6e-14	53.8
LXL04_038706	`PF07716.21`	bZIP_2	178	229	4.4e-11	43.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P42777`	Arabidopsis thaliana	G-box-binding factor 4	45.498%	Swiss-Prot	moderate database homology
`Q9SJN0`	Arabidopsis thaliana	Protein ABSCISIC ACID-INSENSITIVE 5	34.419%	Swiss-Prot	moderate database homology
`Q9LES3`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 2	32.210%	Swiss-Prot	moderate database homology
`Q0JHF1`	Oryza sativa subsp. japonica	bZIP transcription factor 12	37.000%	Swiss-Prot	moderate database homology
`Q69TW5`	Oryza sativa subsp. japonica	bZIP transcription factor 46	28.188%	Swiss-Prot	weak database homology

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