LXL04_037459 | RubberDandelionOmics

Gene overview

LXL04_037459

Reference: OH-1004 Chr: Chr09 Coordinates: 11421835-11423407 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1251 bp · LXL04_037459|LXL04_037459|OH1004|cDNA

ATGCCCACAAAAGAAGCGGTAAAGACGTCCATATTATCTACAAGATGGAAGAACCTCTGGGCTTCTGTCCCCACCAttgattttgatgatgatttgtTGCACGCTAAAGGTAGGCGTACGGCTGATATGACTTCCTTTATGAATTTTGTAGAAAGAGTCTTACAGTTACGTGATTCATTGAGTATGGAGAAGTTTCGTCTATCTTGTCGTGTTTATTGTGATGCATATCAAATACGTTCATGGATTTCTGATGCAATCAT...

CDS

Download CDS FASTA

1251 bp · LXL04_037459|LXL04_037459|OH1004|CDS

ATGCCCACAAAAGAAGCGGTAAAGACGTCCATATTATCTACAAGATGGAAGAACCTCTGGGCTTCTGTCCCCACCATTGATTTTGATGATGATTTGTTGCACGCTAAAGGTAGGCGTACGGCTGATATGACTTCCTTTATGAATTTTGTAGAAAGAGTCTTACAGTTACGTGATTCATTGAGTATGGAGAAGTTTCGTCTATCTTGTCGTGTTTATTGTGATGCATATCAAATACGTTCATGGATTTCTGATGCAATCAT...

Protein

Download Protein FASTA

416 aa · LXL04_037459|LXL04_037459|OH1004|PROTEIN

MPTKEAVKTSILSTRWKNLWASVPTIDFDDDLLHAKGRRTADMTSFMNFVERVLQLRDSLSMEKFRLSCRVYCDAYQIRSWISDAIMHDVRELDLSLFQVYSYAIPESMFHSTSLVSLKIILHYNMKFPSYVSFPRLKTLQLTYGQYVDNEYTEILLSGCPVLEELALFTNTFRSNIAISSPSLKSFTICDEPILIYGKFYYGSSYKINIDATNLTNFEYTGSLSNQILLDNVSNLVKACIDSPLDQATFGTFGLLKQLQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037459`
TK1151 ID	TkA04G309700
OH-1004 ID	LXL04_037459
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	97.400
Protein coverage (%)	TK1151 95.701 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_037459

Location Chr09:11421835-11423407 (+)

Description Similar to At3g03040: F-box protein At3g03040

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03040`	F-box protein At3g03040.	No verified direct reference in this release
`At4g14096`	F-box/LRR-repeat protein At4g14096.	No verified direct reference in this release
`At3g58860`	Putative F-box protein At3g58860.	No verified direct reference in this release
`At3g59210`	F-box/LRR-repeat protein At3g59210.	No verified direct reference in this release
`At3g58900`	F-box/LRR-repeat protein At3g58900.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_037459 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT3G03040

ath:AT3G58860

ath:AT3G58900

ath:AT3G59210

ath:AT4G14096

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.786

Rank 1 · LXL04_037459 · OH-1004

Cytoplasm0.284

Rank 2 · LXL04_037459 · OH-1004

Endoplasmic reticulum0.039

Rank 3 · LXL04_037459 · OH-1004

Cell membrane0.039

Rank 4 · LXL04_037459 · OH-1004

Plastid0.017

Rank 5 · LXL04_037459 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24758.2LRR_At5g5637079-191 aa

PF08387.16FBD338-377 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037459	`PF24758.2`	LRR_At5g56370	79	191	2.6e-17	64.0
LXL04_037459	`PF08387.16`	FBD	338	377	2.5e-08	34.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LDJ9`	Arabidopsis thaliana	F-box protein At3g03040	29.399%	Swiss-Prot	weak database homology
`Q94B46`	Arabidopsis thaliana	F-box/LRR-repeat protein At4g14096	30.812%	Swiss-Prot	moderate database homology
`Q9LXR6`	Arabidopsis thaliana	Putative F-box protein At3g58860	28.218%	Swiss-Prot	weak database homology
`Q8GW80`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g59210	31.285%	Swiss-Prot	moderate database homology
`Q93ZX6`	Arabidopsis thaliana	F-box/LRR-repeat protein At3g58900	33.977%	Swiss-Prot	moderate database homology

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