LXL04_037137 | RubberDandelionOmics

Gene overview

LXL04_037137

Reference: OH-1004 Chr: Chr08 Coordinates: 53865820-53867874 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1386 bp · LXL04_037137|LXL04_037137|OH1004|cDNA

ATGGGTGAAATGGGTGAGATTAGACACCATGGAGAAGACTCTGAAGACGATAGCAACCATATCCATCTTCCAAAGAAATCTAAGCTGTCATCATTCATCACCCAATCCCAAATCCAACAAGAGTTCGCCCATCACCAGCCTGACGTTGCCCGTCTAAACAACGGCAGCTTCGGCAGCTGCCCAGGTTCAATCATCGCAGCCCAGAAACGTTGGCAGCTTAAGTTTCTCCAACAACCTGACGATTTCTTTTTCAACCAACT...

CDS

Download CDS FASTA

1386 bp · LXL04_037137|LXL04_037137|OH1004|CDS

ATGGGTGAAATGGGTGAGATTAGACACCATGGAGAAGACTCTGAAGACGATAGCAACCATATCCATCTTCCAAAGAAATCTAAGCTGTCATCATTCATCACCCAATCCCAAATCCAACAAGAGTTCGCCCATCACCAGCCTGACGTTGCCCGTCTAAACAACGGCAGCTTCGGCAGCTGCCCAGGTTCAATCATCGCAGCCCAGAAACGTTGGCAGCTTAAGTTTCTCCAACAACCTGACGATTTCTTTTTCAACCAACT...

Protein

Download Protein FASTA

461 aa · LXL04_037137|LXL04_037137|OH1004|PROTEIN

MGEMGEIRHHGEDSEDDSNHIHLPKKSKLSSFITQSQIQQEFAHHQPDVARLNNGSFGSCPGSIIAAQKRWQLKFLQQPDDFFFNQLPTQILRSRTLIKDIINADDVSEVSIVDNATTAAAIVLQHVGWAFAEGRFNKGDAVVMLHCAFQAVKKSIEAYVTRAGGSVIVVHLPFPIHSNDEIISEFRKGLARGKANGRKVRLAIIDHITSMPSLIIPVRELVKICREEGVSQVFVDAAHAVGSVSVDVKDIGADFYVSNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037137`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037137

Location Chr08:53865820-53867874 (-)

Description Similar to LCD: L-cysteine desulfhydrase

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62130`	Catalyzes the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release
`At5g26600`	May catalyze the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0290100`	Catalyzes the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release
`Os01g0290600`	Catalyzes the production of hydrogen sulfide (H2S) from cysteine.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037137 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0019450 L-cysteine catabolic process to pyruvate Biological Process

GO:1903257 selenoneine biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016846 carbon-sulfur lyase activity Molecular Function

GO:0080146 L-cysteine desulfhydrase activity Molecular Function

GO:1990411 hercynylcysteine sulfoxide lyase activity (ergothioneine-forming) Molecular Function

KEGG gene cross-reference

afm:AFUA_2G13295

ath:AT3G62130

ath:AT5G26600

dosa:Os01g0290100

dosa:Os01g0290600

osa:4325157

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.581

Rank 1 · LXL04_037137 · OH-1004

Nucleus0.421

Rank 2 · LXL04_037137 · OH-1004

Endoplasmic reticulum0.065

Rank 3 · LXL04_037137 · OH-1004

Cell membrane0.051

Rank 4 · LXL04_037137 · OH-1004

Peroxisome0.046

Rank 5 · LXL04_037137 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00266.26Aminotran_590-355 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037137	`PF00266.26`	Aminotran_5	90	355	1.1e-17	64.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M1R1`	Arabidopsis thaliana	L-cysteine desulfhydrase	66.429%	Swiss-Prot	strong database homology
`Q3E6S9`	Arabidopsis thaliana	Probable L-cysteine desulfhydrase, chloroplastic	65.743%	Swiss-Prot	strong database homology
`Q9LGZ2`	Oryza sativa subsp. japonica	Putative L-cysteine desulfhydrase 1	65.000%	Swiss-Prot	strong database homology
`Q5JNT6`	Oryza sativa subsp. japonica	Putative L-cysteine desulfhydrase 2	60.194%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card