LXL04_037054 | RubberDandelionOmics

Gene overview

LXL04_037054

Reference: OH-1004 Chr: Chr08 Coordinates: 52434724-52440048 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4491 bp · LXL04_037054|LXL04_037054|OH1004|cDNA

ATGACTGCTGCTTCATTTTGGTTCACATCTCTCTCTTGTTCTTCAGCCTCTGCCATGGCACAAAACTCATCCATGCTTCCATGGCTACCGTTCATCTTGCTCTCTCCCTGTCCCCAAAGAGTACTCTTAGCTTCCATTGATACCCTCTTTCTGTTCACCCTCTTTGTTTTTGCATTCCAAAAGCTCTATTCGAGATTCACCTCCCACAACAATGGTGATTCCGCCATTAACGAACCTCTAGTTGCTAAAAACACAGTCGT...

CDS

Download CDS FASTA

4491 bp · LXL04_037054|LXL04_037054|OH1004|CDS

ATGACTGCTGCTTCATTTTGGTTCACATCTCTCTCTTGTTCTTCAGCCTCTGCCATGGCACAAAACTCATCCATGCTTCCATGGCTACCGTTCATCTTGCTCTCTCCCTGTCCCCAAAGAGTACTCTTAGCTTCCATTGATACCCTCTTTCTGTTCACCCTCTTTGTTTTTGCATTCCAAAAGCTCTATTCGAGATTCACCTCCCACAACAATGGTGATTCCGCCATTAACGAACCTCTAGTTGCTAAAAACACAGTCGT...

Protein

Download Protein FASTA

1496 aa · LXL04_037054|LXL04_037054|OH1004|PROTEIN

MTAASFWFTSLSCSSASAMAQNSSMLPWLPFILLSPCPQRVLLASIDTLFLFTLFVFAFQKLYSRFTSHNNGDSAINEPLVAKNTVVVKTSLSFNLSLLVSVILALLAIVSSILGFTQNTQTPWKVIDGSSWLLQAISFVTIAVLIIHEKKFQAGTHPVSLRIFWVLNFIAIALITYSSIVRLVSNTPFSKNIDLIASISLPFSAFFLIQSVTGSTGVIVTTESEANELTKSSNVSGWASASILSKTFWLWLNPLLKKGY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_037054`
TK1151 ID	TkA04G007510
OH-1004 ID	LXL04_037054
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 95.145 / OH-1004 55.013 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_037054

Location Chr08:52434724-52440048 (-)

Description Similar to ABCC14: ABC transporter C family member 14

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g62700`	Pump for glutathione S-conjugates.	No verified direct reference in this release
`At2g47800`	Involved in the regulation of stomatal aperture.	No verified direct reference in this release
`At1g04120`	Pump for glutathione S-conjugates.	The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement.2001 · DOI: 10.1093/emboj/20.8.1875 The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use.2003 · DOI: 10.1046/j.1365-313x.2003.016012.x Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance.2004 · DOI: 10.1104/pp.103.027045 The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage.2009 · DOI: 10.1074/jbc.m109.030247

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0142800`	ABC transporter that may affect phytic acid transport and compartmentalization.	Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.2009 · DOI: 10.1007/s00122-009-1018-1

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037054 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009624 response to nematode Biological Process

GO:0009651 response to salt stress Biological Process

GO:0010118 stomatal movement Biological Process

GO:0030007 intracellular potassium ion homeostasis Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G04120

ath:AT2G47800

ath:AT3G62700

dosa:Os03g0142800

zma:100125659

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.354

Rank 1 · LXL04_037054 · OH-1004

Cell membrane0.313

Rank 2 · LXL04_037054 · OH-1004

Endoplasmic reticulum0.176

Rank 3 · LXL04_037054 · OH-1004

Cytoplasm0.126

Rank 4 · LXL04_037054 · OH-1004

Golgi apparatus0.105

Rank 5 · LXL04_037054 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00664.29ABC_membrane314-580 aa

PF00005.34ABC_tran653-785 aa

PF00664.29ABC_membrane938-1197 aa

PF00005.34ABC_tran1271-1419 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_037054	`PF00664.29`	ABC_membrane	314	580	1.8e-61	209.0
LXL04_037054	`PF00005.34`	ABC_tran	653	785	3.1e-50	171.1
LXL04_037054	`PF00664.29`	ABC_membrane	938	1197	1.8e-61	209.0
LXL04_037054	`PF00005.34`	ABC_tran	1271	1419	3.1e-50	171.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LZJ5`	Arabidopsis thaliana	ABC transporter C family member 14	65.656%	Swiss-Prot	strong database homology
`Q7DM58`	Arabidopsis thaliana	ABC transporter C family member 4	65.639%	Swiss-Prot	strong database homology
`Q7GB25`	Arabidopsis thaliana	ABC transporter C family member 5	43.071%	Swiss-Prot	moderate database homology
`Q10RX7`	Oryza sativa subsp. japonica	ABC transporter C family member 13	43.022%	Swiss-Prot	moderate database homology

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