Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2256 bp · LXL04_035799|LXL04_035799|OH1004|cDNA
ATGCTACtatattttttgtatttatttaattcttggttattttttcttcttcttttaaTTCTTGCAAATACTTTACGACATGCCACTCAGTCGAGGGCCACCGAAACAGCGACCATGGCAGCAGACAACCTTTCCCCACCTCCGGTAGCGACGGGGATTGGTACTTCTTTGTCAACTCGTTTTTTCAAGAAACCTCTATCGTTCATTGTGAATTCATCCCTTTATCGGAACTTCGCTGCAAAATTCCTAACGTCATCTTC...
2256 bp · LXL04_035799|LXL04_035799|OH1004|CDS
ATGCTACTATATTTTTTGTATTTATTTAATTCTTGGTTATTTTTTCTTCTTCTTTTAATTCTTGCAAATACTTTACGACATGCCACTCAGTCGAGGGCCACCGAAACAGCGACCATGGCAGCAGACAACCTTTCCCCACCTCCGGTAGCGACGGGGATTGGTACTTCTTTGTCAACTCGTTTTTTCAAGAAACCTCTATCGTTCATTGTGAATTCATCCCTTTATCGGAACTTCGCTGCAAAATTCCTAACGTCATCTTC...
Protein
Download Protein FASTA751 aa · LXL04_035799|LXL04_035799|OH1004|PROTEIN
MLLYFLYLFNSWLFFLLLLILANTLRHATQSRATETATMAADNLSPPPVATGIGTSLSTRFFKKPLSFIVNSSLYRNFAAKFLTSSSIANLENMLATDLIENETNAKKVLACPICYEILIWNGDPVFSVDSTPRSILKCSACKKSYSGNETHLDLTIASGTKKYGEYTPASSELFRFPIVSFLYERGWRQGFSIWGGYPGPQKEYEMMKDYFTPIIGGTIIDASCGSGMFSRLFQKSGLFSLVVALDYSESMLKQCYDFI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_035799 |
|---|---|
| TK1151 ID | TkA04G107870 |
| OH-1004 ID | LXL04_035799 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 89.200 |
| Protein coverage (%) | TK1151 95.103 / OH-1004 49.134Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_035799 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr08:29040295-29046280 (+) | |||||||||
| Description | Similar to At1g78140: Uncharacterized methyltransferase At1g78140, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009234 menaquinone biosynthetic process Biological Process GO:0032259 methylation Biological Process GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0010287 plastoglobule Cellular Component GO:0008168 methyltransferase activity Molecular Function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity Molecular Function GO:0043770 demethylmenaquinone methyltransferase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G78140 ath:AT2G41040 sab:SAB1333c These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01209.25Ubie_methyltran211-322 aaPF13489.13Methyltransf_23217-367 aaPF13847.13Methyltransf_31218-325 aaPF13649.13Methyltransf_25220-318 aaPF08241.19Methyltransf_11222-321 aaPF08242.19Methyltransf_12222-320 aaPF08003.18Methyltransf_9569-739 aaPF01209.25Ubie_methyltran572-685 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_035799 | PF01209.25 | Ubie_methyltran | 211 | 322 | 1.3e-19 | 71.2 |
| LXL04_035799 | PF13489.13 | Methyltransf_23 | 217 | 367 | 3.3e-15 | 56.9 |
| LXL04_035799 | PF13847.13 | Methyltransf_31 | 218 | 325 | 1.4e-25 | 90.6 |
| LXL04_035799 | PF13649.13 | Methyltransf_25 | 220 | 318 | 1.3e-32 | 113.1 |
| LXL04_035799 | PF08241.19 | Methyltransf_11 | 222 | 321 | 7.1e-40 | 136.3 |
| LXL04_035799 | PF08242.19 | Methyltransf_12 | 222 | 320 | 4.1e-22 | 79.5 |
| LXL04_035799 | PF08003.18 | Methyltransf_9 | 569 | 739 | 9.5e-08 | 32.1 |
| LXL04_035799 | PF01209.25 | Ubie_methyltran | 572 | 685 | 1.3e-19 | 71.2 |
| LXL04_035799 | PF13489.13 | Methyltransf_23 | 580 | 689 | 3.3e-15 | 56.9 |
| LXL04_035799 | PF13847.13 | Methyltransf_31 | 581 | 689 | 1.4e-25 | 90.6 |
| LXL04_035799 | PF13649.13 | Methyltransf_25 | 583 | 681 | 1.3e-32 | 113.1 |
| LXL04_035799 | PF08241.19 | Methyltransf_11 | 585 | 684 | 7.1e-40 | 136.3 |
| LXL04_035799 | PF08242.19 | Methyltransf_12 | 585 | 683 | 4.1e-22 | 79.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.