LXL04_035691 | RubberDandelionOmics

Gene overview

LXL04_035691

Reference: OH-1004 Chr: Chr08 Coordinates: 27213879-27214780 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

417 bp · LXL04_035691|LXL04_035691|OH1004|cDNA

ATGAAGCCGATGGATGATTTATGGAATGAGATCAGCGGCCTACCATCTCCGATCCCCAACCGCTTCCAAAACTTCTTTCCTCAGGCGCTTCGGTCGCCTGGAACCACCACTCAGTTCCTCCCTCCCCCGCCGTCCACCACCACCATGTTAACTCTACTCACGACTACCGACTCCGCGCATGAAGATCCCAATAAGAGACCTAAACCAAATCCACCACATCAAAATCTTACGCCGGACGCCACTTCTCCACCTGAATACAC...

CDS

Download CDS FASTA

417 bp · LXL04_035691|LXL04_035691|OH1004|CDS

ATGAAGCCGATGGATGATTTATGGAATGAGATCAGCGGCCTACCATCTCCGATCCCCAACCGCTTCCAAAACTTCTTTCCTCAGGCGCTTCGGTCGCCTGGAACCACCACTCAGTTCCTCCCTCCCCCGCCGTCCACCACCACCATGTTAACTCTACTCACGACTACCGACTCCGCGCATGAAGATCCCAATAAGAGACCTAAACCAAATCCACCACATCAAAATCTTACGCCGGACGCCACTTCTCCACCTGAATACAC...

Protein

Download Protein FASTA

138 aa · LXL04_035691|LXL04_035691|OH1004|PROTEIN

MKPMDDLWNEISGLPSPIPNRFQNFFPQALRSPGTTTQFLPPPPSTTTMLTLLTTTDSAHEDPNKRPKPNPPHQNLTPDATSPPEYTEKFRRLMKNRESAARSRARKQARADELEQEVMRLAEENAKLKRLQKEVNYN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035691`
TK1151 ID	TkA04G115570
OH-1004 ID	LXL04_035691
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035691

Location Chr08:27213879-27214780 (+)

Description Similar to FD: Protein FD

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35900`	Transcription factor required for the transition to flowering promoted by FT.	No verified direct reference in this release
`At2g41070`	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter.	No verified direct reference in this release
`At1g45249`	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction.	Arabidopsis basic leucine zipper transcription factors involved in an abscisic acid-dependent signal transduction pathway under drought and high-salinity conditions.2000 · DOI: 10.1073/pnas.190309197 AREB1 is a transcription activator of novel ABRE-dependent ABA signaling that enhances drought stress tolerance in Arabidopsis.2005 · DOI: 10.1105/tpc.105.035659 Transcriptional regulation of ABI3- and ABA-responsive genes including RD29B and RD29A in seeds, germinating embryos, and seedlings of Arabidopsis.2006 · DOI: 10.1007/s11103-005-2418-5
`At2g17770`	Transcription factor required for the transition to flowering promoted by FT.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0859300`	May act as a transcription factor with transactivation activity observed in yeast.	A bZIP transcription factor, OsABI5, is involved in rice fertility and stress tolerance.2008 · DOI: 10.1007/s11103-008-9298-4 Phosphorylation-mediated regulation of a rice ABA responsive element binding factor.2011 · DOI: 10.1016/j.phytochem.2010.10.005 A rice orthologue of the ABA receptor, OsPYL/RCAR5, is a positive regulator of the ABA signal transduction pathway in seed germination and early seedling growth.2012 · DOI: 10.1093/jxb/err338

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035691 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009648 photoperiodism Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0009911 positive regulation of flower development Biological Process

GO:0010115 regulation of abscisic acid biosynthetic process Biological Process

KEGG gene cross-reference

ath:AT1G45249

ath:AT2G17770

ath:AT2G41070

ath:AT4G35900

dosa:Os01g0859300

osa:4325061

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.960

Rank 1 · LXL04_035691 · OH-1004

Cytoplasm0.118

Rank 2 · LXL04_035691 · OH-1004

Cell membrane0.022

Rank 3 · LXL04_035691 · OH-1004

Endoplasmic reticulum0.013

Rank 4 · LXL04_035691 · OH-1004

Plastid0.009

Rank 5 · LXL04_035691 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00170.27bZIP_190-135 aa

PF07716.21bZIP_290-130 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035691	`PF00170.27`	bZIP_1	90	135	4.6e-11	43.4
LXL04_035691	`PF07716.21`	bZIP_2	90	130	2.3e-10	41.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q84JK2`	Arabidopsis thaliana	Protein FD	61.702%	Swiss-Prot	weak database homology
`Q9C5Q2`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 3	71.111%	Swiss-Prot	weak database homology
`Q9M7Q4`	Arabidopsis thaliana	ABSCISIC ACID-INSENSITIVE 5-like protein 5	64.444%	Swiss-Prot	weak database homology
`Q7PCC6`	Arabidopsis thaliana	bZIP transcription factor 27	57.447%	Swiss-Prot	weak database homology
`Q8RZ35`	Oryza sativa subsp. japonica	bZIP transcription factor ABI5 homolog	37.615%	Swiss-Prot	moderate database homology

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