LXL04_035450 | RubberDandelionOmics

Gene overview

LXL04_035450

Reference: OH-1004 Chr: Chr08 Coordinates: 22792559-22795909 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2661 bp · LXL04_035450|LXL04_035450|OH1004|cDNA

ATGTCTGCTAAATCCAAatcttcttcttctgaaaCTCCTCCCGCCACCAAAATCCCGATCAGTAAAACATCACCGGCAACACCCAGAGTGAGTAAACTTAACAGGGGAGTTGCTAAATCCGAGATTGATTCACCATCTCCCCTCCAAACCACGAGAGCCTCTGTGGAACGTTCACCCCGATCTGTTCCTTCAAAGCCTGCACTAGATCGTCGCTCCCCAAAGACCAGCAACCTTGCAGAAAAACCAGCTCCAAGGGTAGT...

CDS

Download CDS FASTA

2661 bp · LXL04_035450|LXL04_035450|OH1004|CDS

ATGTCTGCTAAATCCAAATCTTCTTCTTCTGAAACTCCTCCCGCCACCAAAATCCCGATCAGTAAAACATCACCGGCAACACCCAGAGTGAGTAAACTTAACAGGGGAGTTGCTAAATCCGAGATTGATTCACCATCTCCCCTCCAAACCACGAGAGCCTCTGTGGAACGTTCACCCCGATCTGTTCCTTCAAAGCCTGCACTAGATCGTCGCTCCCCAAAGACCAGCAACCTTGCAGAAAAACCAGCTCCAAGGGTAGT...

Protein

Download Protein FASTA

886 aa · LXL04_035450|LXL04_035450|OH1004|PROTEIN

MSAKSKSSSSETPPATKIPISKTSPATPRVSKLNRGVAKSEIDSPSPLQTTRASVERSPRSVPSKPALDRRSPKTSNLAEKPAPRVVVPKGSELQAQLNALQDDLKKAEEKLLLVEKEKEKAINELKEAQKQSEDTNEKLREALVAQKNAEESIEIEKFRSVEMEQAGIDAAHKKEEQWEKELESVKNQHAADLAALLSATQELEKVKQELAMTCDAKDQALTHADDATKIAENQVEKVETLSAEVTRLKALLNSKFESE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035450`
TK1151 ID	TkA04G129870
OH-1004 ID	LXL04_035450
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_035450

Location Chr08:22792559-22795909 (-)

Description Similar to At5g16730: WEB family protein At5g16730, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g16730`	WEB family protein At5g16730, chloroplastic.	No verified direct reference in this release
`At3g02930`	WEB family protein At3g02930, chloroplastic.	No verified direct reference in this release
`At1g65010`	Putative WEB family protein At1g65010, chloroplastic.	No verified direct reference in this release
`At4g27595`	WEB family protein At4g27595, chloroplastic.	No verified direct reference in this release
`At2g37080`	Acts as a scaffold, mediating interaction of ROPs with different proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035450 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007131 reciprocal meiotic recombination Biological Process

GO:0080175 phragmoplast microtubule organization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005875 microtubule associated complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT1G65010

ath:AT3G02930

ath:AT5G16730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.508

Rank 1 · LXL04_035450 · OH-1004

Cell membrane0.295

Rank 2 · LXL04_035450 · OH-1004

Nucleus0.206

Rank 3 · LXL04_035450 · OH-1004

Golgi apparatus0.079

Rank 4 · LXL04_035450 · OH-1004

Plastid0.062

Rank 5 · LXL04_035450 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05701.17WEMBL90-431 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035450	`PF05701.17`	WEMBL	90	431	3.8e-07	30.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LFE4`	Arabidopsis thaliana	WEB family protein At5g16730, chloroplastic	44.934%	Swiss-Prot	moderate database homology
`Q9M8T5`	Arabidopsis thaliana	WEB family protein At3g02930, chloroplastic	43.604%	Swiss-Prot	moderate database homology
`F4I8B9`	Arabidopsis thaliana	Putative WEB family protein At1g65010, chloroplastic	45.760%	Swiss-Prot	moderate database homology
`F4JJP1`	Arabidopsis thaliana	WEB family protein At4g27595, chloroplastic	40.880%	Swiss-Prot	moderate database homology
`Q9ZQC5`	Arabidopsis thaliana	Interactor of constitutive active ROPs 2, chloroplastic	29.480%	Swiss-Prot	weak database homology

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