LXL04_035377 | RubberDandelionOmics

Gene overview

LXL04_035377

Reference: OH-1004 Chr: Chr08 Coordinates: 21401759-21411098 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

6939 bp · LXL04_035377|LXL04_035377|OH1004|cDNA

ATGGAGATCGAGGAAGAAAGAAGAACTGTTCCTCAAGTTCTCTACGAGACTCGTCATCATGCTTCTAGACCTTACTCTTCAAATTACCCTCCTGTTCATCAGCAGCTAAATGAAGGCACTAAAGGAGGTTTCCTCAGGTTTCTTTCGACGCAAGGTCTCAGTGAGTTTAGAGAAAAATGGACCACAAATAAAAATCCACAAAAGTTGACCAAATATATATCAATGTACGTATCTCCAAGTAGCGAACACGTGGCTATAGC...

CDS

Download CDS FASTA

6939 bp · LXL04_035377|LXL04_035377|OH1004|CDS

ATGGAGATCGAGGAAGAAAGAAGAACTGTTCCTCAAGTTCTCTACGAGACTCGTCATCATGCTTCTAGACCTTACTCTTCAAATTACCCTCCTGTTCATCAGCAGCTAAATGAAGGCACTAAAGGAGGTTTCCTCAGGTTTCTTTCGACGCAAGGTCTCAGTGAGTTTAGAGAAAAATGGACCACAAATAAAAATCCACAAAAGTTGACCAAATATATATCAATGTACGTATCTCCAAGTAGCGAACACGTGGCTATAGC...

Protein

Download Protein FASTA

2312 aa · LXL04_035377|LXL04_035377|OH1004|PROTEIN

MEIEEERRTVPQVLYETRHHASRPYSSNYPPVHQQLNEGTKGGFLRFLSTQGLSEFREKWTTNKNPQKLTKYISMYVSPSSEHVAIAVGNTVTILQRDDNYQNPCGIFTCSYPITYTFGAWSEDHGVLGIIDNTDTLYFIRANGEEINRITKQHLKLPSPIISFGVHEDKDVKKSLLCTFSILASDGSVHDIEISQDPSASISTMSSSNAGSLSQKQFPQNISCCGSHPDSSLFAVVSSAASITSTSTLTSGPYSISIWQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035377`
TK1151 ID	TkA04G140590
OH-1004 ID	LXL04_035377
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.800
Protein coverage (%)	TK1151 100.000 / OH-1004 82.266 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035377

Location Chr08:21401759-21411098 (+)

Description Similar to MIP2: MAG2-interacting protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g24350`	Required for proper maturation of seed storage proteins.	MAG2 and three MAG2-INTERACTING PROTEINs form an ER-localized complex to facilitate storage protein transport in Arabidopsis thaliana.2013 · DOI: 10.1111/tpj.12347

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_035377 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process

GO:0000956 nuclear-transcribed mRNA catabolic process Biological Process

GO:0006624 vacuolar protein processing Biological Process

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Biological Process

GO:0015031 protein transport Biological Process

GO:0032527 protein exit from endoplasmic reticulum Biological Process

GO:0051604 protein maturation Biological Process

GO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Biological Process

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

KEGG gene cross-reference

ath:AT5G24350

dre:556592

hsa:51594

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.456

Rank 1 · LXL04_035377 · OH-1004

Cytoplasm0.420

Rank 2 · LXL04_035377 · OH-1004

Golgi apparatus0.097

Rank 3 · LXL04_035377 · OH-1004

Cell membrane0.076

Rank 4 · LXL04_035377 · OH-1004

Endoplasmic reticulum0.071

Rank 5 · LXL04_035377 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30506.1Beta-prop_MIP215-395 aa

PF24520.2ARM_KNTC1_1st442-636 aa

PF08314.18Sec39579-785 aa

PF08314.18Sec39901-1122 aa

PF26751.1All-alpha_MIP21638-1967 aa

PF26752.1MIP2_C1983-2212 aa

PF26752.1MIP2_C2213-2310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035377	`PF30506.1`	Beta-prop_MIP2	15	395	4.8e-155	516.9
LXL04_035377	`PF24520.2`	ARM_KNTC1_1st	442	636	1.5e-13	51.9
LXL04_035377	`PF08314.18`	Sec39	579	785	3.2e-30	106.0
LXL04_035377	`PF08314.18`	Sec39	901	1122	3.2e-30	106.0
LXL04_035377	`PF26751.1`	All-alpha_MIP2	1638	1967	8.4e-121	403.6
LXL04_035377	`PF26752.1`	MIP2_C	1983	2212	5.1e-107	358.4
LXL04_035377	`PF26752.1`	MIP2_C	2213	2310	5.1e-107	358.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIN7`	Arabidopsis thaliana	MAG2-interacting protein 2	46.914%	Swiss-Prot	moderate database homology

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