Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1449 bp · LXL04_035047|LXL04_035047|OH1004|cDNA
ATGTTAAAGTCACAAGAGTTTTCTGGTGAGATCTTGAGATTCGATCAAGATGAAGCCATCAACGAACAAGTACTCATCGATTTCATTCAATCAGAACAGGAAATATCCAATAGCCGAGGTTTTGAGTTTTGGTTGGCGAAGGTTTATCAATCATCAATGGCGTTGCTACAGTTTATGTGCTCCGTAACGCCACTTGCACGTGCCGCAAGGTCACGTTCCATCATCGTCTCCTCCTCCCGAACCGTCGTCACTGTCCCCAC...
1449 bp · LXL04_035047|LXL04_035047|OH1004|CDS
ATGTTAAAGTCACAAGAGTTTTCTGGTGAGATCTTGAGATTCGATCAAGATGAAGCCATCAACGAACAAGTACTCATCGATTTCATTCAATCAGAACAGGAAATATCCAATAGCCGAGGTTTTGAGTTTTGGTTGGCGAAGGTTTATCAATCATCAATGGCGTTGCTACAGTTTATGTGCTCCGTAACGCCACTTGCACGTGCCGCAAGGTCACGTTCCATCATCGTCTCCTCCTCCCGAACCGTCGTCACTGTCCCCAC...
Protein
Download Protein FASTA482 aa · LXL04_035047|LXL04_035047|OH1004|PROTEIN
MLKSQEFSGEILRFDQDEAINEQVLIDFIQSEQEISNSRGFEFWLAKVYQSSMALLQFMCSVTPLARAARSRSIIVSSSRTVVTVPTTTTTTTTTTTTTTTTSSKIKVSPPDSNVLLGMSEEQLQQLAIDFGQQSYRGKQLHHLLYKRRVKDIQEFSQVPLAFRTELQVAGWVVGRSSVHSSVKAADGTIKLLIKLEDNRLVETVGIPVADDKGSVRLTCCVSSQVGCPLRCSFCATGKGGFSRNLKGHEIVEQVLAIEE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_035047 |
|---|---|
| TK1151 ID | TkA04G175210 |
| OH-1004 ID | LXL04_035047 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 95.300 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 89.212Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_035047 |
|---|---|
| Location | Chr08:12271846-12274685 (-) |
| Description | Similar to rlmN: Probable dual-specificity RNA methyltransferase RlmN (Acaryochloris marina (strain MBIC 11017) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0030488 tRNA methylation Biological Process GO:0070475 rRNA base methylation Biological Process GO:0005737 cytoplasm Cellular Component GO:0000049 tRNA binding Molecular Function GO:0002935 tRNA (adenine(37)-C2)-methyltransferase activity Molecular Function GO:0019843 rRNA binding Molecular Function GO:0046872 metal ion binding Molecular Function GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function GO:0070040 rRNA (adenine(2503)-C2-)-methyltransferase activity Molecular Function |
| KEGG gene cross-reference | amr:AM1_3982 cya:CYA_2570 gvi:gll2079 npu:Npun_F3954 tel:tll2425 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF21016.4RlmN_N116-168 aaPF04055.28Radical_SAM223-386 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_035047 | PF21016.4 | RlmN_N | 116 | 168 | 6.2e-06 | 26.6 |
| LXL04_035047 | PF04055.28 | Radical_SAM | 223 | 386 | 1.3e-17 | 65.2 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.