LXL04_034763 | RubberDandelionOmics

Gene overview

LXL04_034763

Reference: OH-1004 Chr: Chr07 Coordinates: 116072987-116075197 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

768 bp · LXL04_034763|LXL04_034763|OH1004|cDNA

ATGGAGAAATCCAAGATTGGGAGAAGATTTGAAGGAAAAGTTGCGATTGTTACAGCCTCAACTCAAGGCATAGGTTTCGCTATTGCTCAACGGATCGGCTTAGAAGGCGGATCAGTCGTCATCTCCTCTCGCAAACAGAAAAACGTTGATGAGGCAGTGAAAAAGCTCAAGGCTTCTGGAATCGAAGTGTTGGGATTGGTATGCCATGTTTCTAATGCACAACAGAGAAAGAATCTCATTGACCAGACAGTTGAGAAATA...

CDS

Download CDS FASTA

768 bp · LXL04_034763|LXL04_034763|OH1004|CDS

ATGGAGAAATCCAAGATTGGGAGAAGATTTGAAGGAAAAGTTGCGATTGTTACAGCCTCAACTCAAGGCATAGGTTTCGCTATTGCTCAACGGATCGGCTTAGAAGGCGGATCAGTCGTCATCTCCTCTCGCAAACAGAAAAACGTTGATGAGGCAGTGAAAAAGCTCAAGGCTTCTGGAATCGAAGTGTTGGGATTGGTATGCCATGTTTCTAATGCACAACAGAGAAAGAATCTCATTGACCAGACAGTTGAGAAATA...

Protein

Download Protein FASTA

255 aa · LXL04_034763|LXL04_034763|OH1004|PROTEIN

MEKSKIGRRFEGKVAIVTASTQGIGFAIAQRIGLEGGSVVISSRKQKNVDEAVKKLKASGIEVLGLVCHVSNAQQRKNLIDQTVEKYGKIDVVVSNAAANPSVNTILKTQESALDKLWEINVKTSILLLKDASPHLAEGSSVVFISSVTAFQPPAGLAMYGVTKTALLGLTKALASEMAPHTRVNCVAPGFVPTHFAGFITSNEAMRKSLEEQTCLKRLGTTEDMAAATAFLASDDASYITGETIVVAGGMPSRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034763`
TK1151 ID	TkA08G434420
OH-1004 ID	LXL04_034763
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034763

Location Chr07:116072987-116075197 (-)

Description Similar to Tropinone reductase-like 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g05530`	Involved with IBR3 and IBR10 in the peroxisomal beta- oxidation of indole-3-butyric acid (IBA) to form indole-3-acetic acid (IAA), a biologically active auxin.	Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins.2009 · DOI: 10.1007/s11103-008-9431-4 Conversion of endogenous indole-3-butyric acid to indole-3-acetic acid drives cell expansion in Arabidopsis seedlings.2010 · DOI: 10.1104/pp.110.157461

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_034763 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0001523 retinoid metabolic process Biological Process

GO:0006066 alcohol metabolic process Biological Process

GO:0006631 fatty acid metabolic process Biological Process

GO:0008202 steroid metabolic process Biological Process

GO:0042180 ketone metabolic process Biological Process

GO:0042574 retinal metabolic process Biological Process

GO:0048767 root hair elongation Biological Process

GO:0080024 indolebutyric acid metabolic process Biological Process

GO:0080026 response to indolebutyric acid Biological Process

GO:2000379 positive regulation of reactive oxygen species metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT4G05530

hsa:10901

pon:100172190

ssc:397082

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.515

Rank 1 · LXL04_034763 · OH-1004

Peroxisome0.285

Rank 2 · LXL04_034763 · OH-1004

Nucleus0.168

Rank 3 · LXL04_034763 · OH-1004

Mitochondrion0.165

Rank 4 · LXL04_034763 · OH-1004

Plastid0.081

Rank 5 · LXL04_034763 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106.32adh_short13-203 aa

PF23441.1SDR16-250 aa

PF08659.17KR16-184 aa

PF13561.13adh_short_C219-251 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034763	`PF00106.32`	adh_short	13	203	2.2e-42	145.5
LXL04_034763	`PF23441.1`	SDR	16	250	2.6e-11	44.1
LXL04_034763	`PF08659.17`	KR	16	184	1.5e-10	42.0
LXL04_034763	`PF13561.13`	adh_short_C2	19	251	7.2e-59	199.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S9W2`	Arabidopsis thaliana	Short-chain dehydrogenase/reductase SDRA	72.941%	Swiss-Prot	strong database homology

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