LXL04_034027 | RubberDandelionOmics

Gene overview

LXL04_034027

Reference: OH-1004 Chr: Chr07 Coordinates: 75661375-75666047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1320 bp · LXL04_034027|LXL04_034027|OH1004|cDNA

atgtgtgtatgtgtttgtttgTGTCTCTCTCTATCCCGTGTATTGAAAGTGGAGGTTTATCTTAGGCAAGAAATGCATCTACATATGCACTTGTTTATACTGCTAACAATCTTTTCGTCAAAGGTCTCTTGTTCTGGTCATAAAAAAATTAATCATCGACCCCAGACTAAGCCACAGCTGGTCAATGTAGACGATTATGGAGCCACTGGTAACGGCACTGATGAGTCTGAGGCATTTATGAAAGCATGGAGGAACGCCTG...

CDS

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1320 bp · LXL04_034027|LXL04_034027|OH1004|CDS

ATGTGTGTATGTGTTTGTTTGTGTCTCTCTCTATCCCGTGTATTGAAAGTGGAGGTTTATCTTAGGCAAGAAATGCATCTACATATGCACTTGTTTATACTGCTAACAATCTTTTCGTCAAAGGTCTCTTGTTCTGGTCATAAAAAAATTAATCATCGACCCCAGACTAAGCCACAGCTGGTCAATGTAGACGATTATGGAGCCACTGGTAACGGCACTGATGAGTCTGAGGCATTTATGAAAGCATGGAGGAACGCCTG...

Protein

Download Protein FASTA

439 aa · LXL04_034027|LXL04_034027|OH1004|PROTEIN

MCVCVCLCLSLSRVLKVEVYLRQEMHLHMHLFILLTIFSSKVSCSGHKKINHRPQTKPQLVNVDDYGATGNGTDESEAFMKAWRNACDTFSGSEFVVPENKVYHLKPITFSGPCKPNLKFKIYGTLKASSRRSDYDQERKRWITFKHLENFVVEGGGTINGNGRIWWIKSCKIDENQPCKDAPTAVTFKNCKSLRVNNIRIKNPQQIHLTFLNSVNVRASNLRLIAPGNSPNTDGLHVSDSQNVRIINSVVKTEKAALIN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_034027`
TK1151 ID	TkA08G330840
OH-1004 ID	LXL04_034027
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.500
Protein coverage (%)	TK1151 92.774 / OH-1004 92.938 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_034027

Location Chr07:75661375-75666047 (+)

Description Similar to Polygalacturonase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07970`	Polygalacturonase required for cell type-specific pectin degradation to separate microspores.	ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis.2009 · DOI: 10.1105/tpc.108.063768 Tetrad analysis possible in Arabidopsis with mutation of the QUARTET (QRT) genes.1994 · DOI: 10.1126/science.8197459

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_034027 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005975 carbohydrate metabolic process Biological Process

GO:0009830 cell wall modification involved in abscission Biological Process

GO:0009835 fruit ripening Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0010047 fruit dehiscence Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0048235 pollen sperm cell differentiation Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004650 polygalacturonase activity Molecular Function

KEGG gene cross-reference

ath:AT3G07970

sly:544051

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.668

Rank 1 · LXL04_034027 · OH-1004

Cytoplasm0.100

Rank 2 · LXL04_034027 · OH-1004

Lysosome / Vacuole0.080

Rank 3 · LXL04_034027 · OH-1004

Endoplasmic reticulum0.077

Rank 4 · LXL04_034027 · OH-1004

Cell membrane0.072

Rank 5 · LXL04_034027 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00295.24Glyco_hydro_2887-426 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_034027	`PF00295.24`	Glyco_hydro_28	87	426	4e-93	312.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SFB7`	Arabidopsis thaliana	Polygalacturonase QRT2	54.897%	Swiss-Prot	strong database homology

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