LXL04_033459 | RubberDandelionOmics

Gene overview

LXL04_033459

Reference: OH-1004 Chr: Chr07 Coordinates: 44368557-44374043 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2136 bp · LXL04_033459|LXL04_033459|OH1004|cDNA

ATGGAACAAGGCGAGGGTTCTCGTTCACAGCCATCTGATGAAATATGGTCCAAACTTGTGCCATCAGACAACAAGTTTTCAGAAGTTGAATTGTGGTTAAATGAGGCGGAGATAAATTCAGAGTTCAAAATCTCTTCgtttgaaaaacaaaaatggtGTAAAATTACAAGAAATACGGATCTTTCTTCTGCAACATTGCAAAATAAGAGTTTAAATGTGATTTTTGTGGATGGAACTGATGTTCCAACAGAAGATACGAT...

CDS

Download CDS FASTA

2136 bp · LXL04_033459|LXL04_033459|OH1004|CDS

ATGGAACAAGGCGAGGGTTCTCGTTCACAGCCATCTGATGAAATATGGTCCAAACTTGTGCCATCAGACAACAAGTTTTCAGAAGTTGAATTGTGGTTAAATGAGGCGGAGATAAATTCAGAGTTCAAAATCTCTTCGTTTGAAAAACAAAAATGGTGTAAAATTACAAGAAATACGGATCTTTCTTCTGCAACATTGCAAAATAAGAGTTTAAATGTGATTTTTGTGGATGGAACTGATGTTCCAACAGAAGATACGAT...

Protein

Download Protein FASTA

711 aa · LXL04_033459|LXL04_033459|OH1004|PROTEIN

MEQGEGSRSQPSDEIWSKLVPSDNKFSEVELWLNEAEINSEFKISSFEKQKWCKITRNTDLSSATLQNKSLNVIFVDGTDVPTEDTIMIRCGSEIILGPTSEGYLSYRFKVMPVDEPSKKVIKISLDSDHAKCSICLNIWHDVVTVAPCLHNFCNGCFSEWLKRSQAKHATVLCPHCRSVVQFVGRNHFLHSIEEEILQSDSSLRRSDEELAVLNTYSLIKSPLVINNGKKPRGKRSRAIPEEDSSSSSTNLACAQCGTE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033459`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_033459

Location Chr07:44368557-44374043 (+)

Description Similar to CPN20: 20 kDa chaperonin, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g20720`	Seems to function only as a co-chaperone, along with CPN60, and in certain cases is essential for the discharge of biologically active proteins from CPN60.	CHAPERONIN 20 mediates iron superoxide dismutase (FeSOD) activity independent of its co-chaperonin role in Arabidopsis chloroplasts.2013 · DOI: 10.1111/j.1469-8137.2012.04369.x Cochaperonin CPN20 negatively regulates abscisic acid signaling in Arabidopsis.2013 · DOI: 10.1007/s11103-013-0082-8

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033459 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006457 protein folding Biological Process

GO:0009409 response to cold Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0051290 protein heterotetramerization Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT5G20720

tex:Teth514_0512

tpd:Teth39_1722

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.492

Rank 1 · LXL04_033459 · OH-1004

Nucleus0.377

Rank 2 · LXL04_033459 · OH-1004

Mitochondrion0.109

Rank 3 · LXL04_033459 · OH-1004

Cell membrane0.103

Rank 4 · LXL04_033459 · OH-1004

Endoplasmic reticulum0.089

Rank 5 · LXL04_033459 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13639.13zf-RING_2132-178 aa

PF13923.13zf-C3HC4_2132-177 aa

PF00097.32zf-C3HC4133-177 aa

PF17979.8zf-CRD254-417 aa

PF00166.27Cpn10520-609 aa

PF00166.27Cpn10618-709 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033459	`PF13639.13`	zf-RING_2	132	178	1e-06	29.6
LXL04_033459	`PF13923.13`	zf-C3HC4_2	132	177	7.7e-06	26.3
LXL04_033459	`PF00097.32`	zf-C3HC4	133	177	2e-07	31.5
LXL04_033459	`PF17979.8`	zf-CRD	254	417	7.9e-52	176.4
LXL04_033459	`PF00166.27`	Cpn10	520	609	1.4e-58	195.6
LXL04_033459	`PF00166.27`	Cpn10	618	709	1.4e-58	195.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O65282`	Arabidopsis thaliana	20 kDa chaperonin, chloroplastic	76.087%	Swiss-Prot	weak database homology

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