LXL04_033293 | RubberDandelionOmics

Gene overview

LXL04_033293

Reference: OH-1004 Chr: Chr07 Coordinates: 40372815-40375730 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1638 bp · LXL04_033293|LXL04_033293|OH1004|cDNA

ATGATAGTGGGTTTATGGATCTTACTCAGGCCTGGAGAAGGAATGATGTTGAAGAGACCGTATTATAATCGACACCAGCTGAAGCAAGTTAAGGGACTGTTGGGCAGATTCAGGATTGTGGTTTTTTTAATTGTTATTCTGATCATCTACTTCATCGTCATCTCCACCAGCAAGACCAATTACTTATCGCCAGAATCCCCATCTGAGGTCACCTCTTTACAACTCCCTTTTAATCTTCAACCTTCGTATGCTTCTCTTAT...

CDS

Download CDS FASTA

1638 bp · LXL04_033293|LXL04_033293|OH1004|CDS

ATGATAGTGGGTTTATGGATCTTACTCAGGCCTGGAGAAGGAATGATGTTGAAGAGACCGTATTATAATCGACACCAGCTGAAGCAAGTTAAGGGACTGTTGGGCAGATTCAGGATTGTGGTTTTTTTAATTGTTATTCTGATCATCTACTTCATCGTCATCTCCACCAGCAAGACCAATTACTTATCGCCAGAATCCCCATCTGAGGTCACCTCTTTACAACTCCCTTTTAATCTTCAACCTTCGTATGCTTCTCTTAT...

Protein

Download Protein FASTA

545 aa · LXL04_033293|LXL04_033293|OH1004|PROTEIN

MIVGLWILLRPGEGMMLKRPYYNRHQLKQVKGLLGRFRIVVFLIVILIIYFIVISTSKTNYLSPESPSEVTSLQLPFNLQPSYASLISVEKLWNPADSGGWIPSSTPRSNWPPPPKETNGYLRVRCNGGLNQQRTAICNAVLAARIMNATLVLPELDTNSYWHDDSGFQGLYDVDYFIKSLRFDVRIVESIPEIRKNGKTKKIKAFQIRPPRDAGIDWYTSVALEKMKEHGAIYLTPFSHRLAEEINNPEYQRLRCRVNY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033293`
TK1151 ID	TkA08G249110
OH-1004 ID	LXL04_033293
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.300
Protein coverage (%)	TK1151 99.617 / OH-1004 98.349 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033293

Location Chr07:40372815-40375730 (-)

Description Similar to OFUT1: O-fucosyltransferase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g04910`	O-fucosyltransferase 1.	No verified direct reference in this release
`At4g24530`	O-fucosyltransferase 31.	No verified direct reference in this release
`At5g65470`	O-fucosyltransferase 39.	No verified direct reference in this release
`At1g22460`	O-fucosyltransferase 7.	No verified direct reference in this release
`At1g14020`	Glycosyltransferase involved in the formation of rhamnogalacturonan I (RG-I) oligosaccharides in the seed coat mucilage, which is a specialized cell wall with abundant RG-I (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033293 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006004 fucose metabolic process Biological Process

GO:0045489 pectin biosynthetic process Biological Process

GO:0071555 cell wall organization Biological Process

GO:0000137 Golgi cis cisterna Cellular Component

GO:0000138 Golgi trans cisterna Cellular Component

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT1G04910

ath:AT1G14020

ath:AT1G22460

ath:AT4G24530

ath:AT5G65470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.826

Rank 1 · LXL04_033293 · OH-1004

Endoplasmic reticulum0.066

Rank 2 · LXL04_033293 · OH-1004

Cell membrane0.059

Rank 3 · LXL04_033293 · OH-1004

Cytoplasm0.041

Rank 4 · LXL04_033293 · OH-1004

Extracellular0.038

Rank 5 · LXL04_033293 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10250.16O-FucT121-441 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033293	`PF10250.16`	O-FucT	121	441	3.4e-90	303.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8W486`	Arabidopsis thaliana	O-fucosyltransferase 1	77.632%	Swiss-Prot	strong database homology
`Q7Y030`	Arabidopsis thaliana	O-fucosyltransferase 31	35.531%	Swiss-Prot	moderate database homology
`Q0WUZ5`	Arabidopsis thaliana	O-fucosyltransferase 39	36.142%	Swiss-Prot	moderate database homology
`B7ZWR7`	Arabidopsis thaliana	O-fucosyltransferase 7	36.092%	Swiss-Prot	moderate database homology
`Q6NQ51`	Arabidopsis thaliana	Rhamnogalacturonan I rhamnosyltransferase 1	38.945%	Swiss-Prot	moderate database homology

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