LXL04_033223 | RubberDandelionOmics

Gene overview

LXL04_033223

Reference: OH-1004 Chr: Chr07 Coordinates: 38705060-38707952 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

972 bp · LXL04_033223|LXL04_033223|OH1004|cDNA

ATGCGACGTCAGCTCTATCGGCTCACGGAGGCATCATCGTCATCTCTCCCTCCGGTGGCCGTTTCCATGGCGTCTCAATTTATCCGTGAATGGAGTGGGATTCAGCAATTCCCTCCTGCTACCCAAGACAAGTTGCTACAATTGTTGGGAAAACTAAAGGAGAAGAAAAAAGATAGGTTAACGATCCTCGTAATGGGGAAAGGTGGAGTTGGAAAGTCTTCAACTGTGAACTCTATCTTTGGTGAAAGAGCAGTTACTGT...

CDS

Download CDS FASTA

972 bp · LXL04_033223|LXL04_033223|OH1004|CDS

ATGCGACGTCAGCTCTATCGGCTCACGGAGGCATCATCGTCATCTCTCCCTCCGGTGGCCGTTTCCATGGCGTCTCAATTTATCCGTGAATGGAGTGGGATTCAGCAATTCCCTCCTGCTACCCAAGACAAGTTGCTACAATTGTTGGGAAAACTAAAGGAGAAGAAAAAAGATAGGTTAACGATCCTCGTAATGGGGAAAGGTGGAGTTGGAAAGTCTTCAACTGTGAACTCTATCTTTGGTGAAAGAGCAGTTACTGT...

Protein

Download Protein FASTA

323 aa · LXL04_033223|LXL04_033223|OH1004|PROTEIN

MRRQLYRLTEASSSSLPPVAVSMASQFIREWSGIQQFPPATQDKLLQLLGKLKEKKKDRLTILVMGKGGVGKSSTVNSIFGERAVTVSAFQSEALRPTMVSRERSGFTLNIIDTPGIVEGGYVNDQALEIIKRFLLNKTIDVLLYVDRLDAYRVDTLDGQIVKAITNTFGQEIWRRAIVVLTHSQLSPPDCLTYDDFLAKRSEALLKVVYNGARFTKQDIQSYSIPVGLVENSSRCNKNEKDEKILPNGTAWIPSIVETI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_033223`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_033223

Location Chr07:38705060-38707952 (+)

Description Similar to TOC34: Translocase of chloroplast 34, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g05000`	GTPase involved in protein precursor import into chloroplasts.	Two Toc34 homologues with different properties.2003 · DOI: 10.1021/bi034001q The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins.2003 · DOI: 10.1105/tpc.012955 An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02024.x Deletion of core components of the plastid protein import machinery causes differential arrest of embryo development in Arabidopsis thaliana.2006 · DOI: 10.1055/s-2005-873044
`At1g02280`	GTPase involved in protein precursor import into chloroplasts.	Chloroplast protein translocon components atToc159 and atToc33 are not essential for chloroplast biogenesis in guard cells and root cells.2001 · DOI: 10.1104/pp.127.1.90 Two Toc34 homologues with different properties.2003 · DOI: 10.1021/bi034001q Unusual nucleotide-binding properties of the chloroplast protein import receptor, atToc33.2003 · DOI: 10.1016/s0014-5793(03)00478-2 Dimerization of Toc-GTPases at the chloroplast protein import machinery.2003 · DOI: 10.1074/jbc.m305946200 The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins.2003 · DOI: 10.1105/tpc.012955 The roles of toc34 and toc75 in targeting the toc159 preprotein receptor to chloroplasts.2003 · DOI: 10.1074/jbc.m307873200 An outer envelope membrane component of the plastid protein import apparatus plays an essential role in Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02024.x In vivo assessment of the significance of phosphorylation of the Arabidopsis chloroplast protein import receptor, atToc33.2006 · DOI: 10.1016/j.febslet.2005.12.055 Phospho-mimicry mutant of atToc33 affects early development of Arabidopsis thaliana.2007 · DOI: 10.1016/j.febslet.2007.11.071

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033223 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0015031 protein transport Biological Process

GO:0019750 chloroplast localization Biological Process

GO:0045036 protein targeting to chloroplast Biological Process

GO:0045037 protein import into chloroplast stroma Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009536 plastid Cellular Component

GO:0009707 chloroplast outer membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0003924 GTPase activity Molecular Function

KEGG gene cross-reference

ath:AT1G02280

ath:AT5G05000

cre:CHLRE_06g252200v5

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.225

Rank 1 · LXL04_033223 · OH-1004

Cell membrane0.191

Rank 2 · LXL04_033223 · OH-1004

Plastid0.179

Rank 3 · LXL04_033223 · OH-1004

Endoplasmic reticulum0.164

Rank 4 · LXL04_033223 · OH-1004

Mitochondrion0.154

Rank 5 · LXL04_033223 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03193.23RsgA_GTPase47-119 aa

PF04548.23AIG160-210 aa

PF01926.30MMR_HSR162-165 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_033223	`PF03193.23`	RsgA_GTPase	47	119	1.8e-08	35.1
LXL04_033223	`PF04548.23`	AIG1	60	210	1.3e-33	116.9
LXL04_033223	`PF01926.30`	MMR_HSR1	62	165	1.3e-11	45.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38906`	Arabidopsis thaliana	Translocase of chloroplast 34, chloroplastic	68.227%	Swiss-Prot	strong database homology
`O23680`	Arabidopsis thaliana	Translocase of chloroplast 33, chloroplastic	58.983%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card