Gene Card
Gene overview
cDNA / CDS / Protein Sequences
402 bp · LXL04_033147|LXL04_033147|OH1004|cDNA
ATGCCTTTGAAAATAGCCGACGCGACCTTATCGACCTTCAACGCCGTTTTCGAGAAATTCAAATCCGAAGCACCAAACAACAAAAGCaatttcatattgttcttgGCTGATATCGAACCTTCCACTAATCTCAGTTGGTGCCCTGATTGTGTGCGAGCTGAACCTGTTATATACAAAAAACTTGAATCATCAAGTGATGACGTGGCACTCCTAAGGGCTTACGTGGGAGACAGGCCCACGTGGAGGAATCCACATCACCC...
402 bp · LXL04_033147|LXL04_033147|OH1004|CDS
ATGCCTTTGAAAATAGCCGACGCGACCTTATCGACCTTCAACGCCGTTTTCGAGAAATTCAAATCCGAAGCACCAAACAACAAAAGCAATTTCATATTGTTCTTGGCTGATATCGAACCTTCCACTAATCTCAGTTGGTGCCCTGATTGTGTGCGAGCTGAACCTGTTATATACAAAAAACTTGAATCATCAAGTGATGACGTGGCACTCCTAAGGGCTTACGTGGGAGACAGGCCCACGTGGAGGAATCCACATCACCC...
Protein
Download Protein FASTA133 aa · LXL04_033147|LXL04_033147|OH1004|PROTEIN
MPLKIADATLSTFNAVFEKFKSEAPNNKSNFILFLADIEPSTNLSWCPDCVRAEPVIYKKLESSSDDVALLRAYVGDRPTWRNPHHPLRVDSKFKLKGVPTLVVWENGEVKGRLEDHEAHIERKIDELLNANK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_033147 |
|---|---|
| TK1151 ID | TkA08G234940 |
| OH-1004 ID | LXL04_033147 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_033147 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr07:37066460-37069701 (-) | ||||||||||||
| Description | Similar to At5g42850: Thioredoxin-like protein Clot | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0033209 tumor necrosis factor-mediated signaling pathway Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009536 plastid Cellular Component GO:0070062 extracellular exosome Cellular Component GO:0004601 peroxidase activity Molecular Function GO:0047134 protein-disulfide reductase [NAD(P)H] activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT5G42850 dosa:Os06g0320000 hsa:84817 mmu:52700 pon:100171754 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF06110.18TXD17-like_Trx13-129 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_033147 | PF06110.18 | TXD17-like_Trx | 13 | 129 | 1.2e-32 | 112.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.