Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1017 bp · LXL04_033069|LXL04_033069|OH1004|cDNA
ATGCTCGATGCTGATTTTGCCACGTCGTTTTTGTCTTCTGCCGTTCTGCCGCTTTTGAGGTGTGTTGCACGCATGACGCATGTAATCATCTACACCTCTTTGAAGTTTCATCAACTATATGTATGGTCGCTGTGTGCCTGTGTCTATGCATCCCATGAACATTGCTTCCCTATCTTTCTGACAAGCAAAGGCATCGCGGCGGTGAAGAATCCTCGGCAACTCCATCAAGGGGAGCAAGATCAATTATGTGTACCCAAGTT...
1017 bp · LXL04_033069|LXL04_033069|OH1004|CDS
ATGCTCGATGCTGATTTTGCCACGTCGTTTTTGTCTTCTGCCGTTCTGCCGCTTTTGAGGTGTGTTGCACGCATGACGCATGTAATCATCTACACCTCTTTGAAGTTTCATCAACTATATGTATGGTCGCTGTGTGCCTGTGTCTATGCATCCCATGAACATTGCTTCCCTATCTTTCTGACAAGCAAAGGCATCGCGGCGGTGAAGAATCCTCGGCAACTCCATCAAGGGGAGCAAGATCAATTATGTGTACCCAAGTT...
Protein
Download Protein FASTA338 aa · LXL04_033069|LXL04_033069|OH1004|PROTEIN
MLDADFATSFLSSAVLPLLRCVARMTHVIIYTSLKFHQLYVWSLCACVYASHEHCFPIFLTSKGIAAVKNPRQLHQGEQDQLCVPKFGFSTIFHPKKGFHGVSIRKPAWSLERFDAGIESSKSGNVRPATEPYTDEAIQAVKSGKVIAVPTDTLYGFACDACSVEAVNRIYEIKGRKHTSPLAICVGDINHIPRFAVTTHLPPGLLDSLLPGPVTLVLTRGESSILEKSLNAGLDTVGVRIPDFEFIRMIARGSGSALAL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_033069 |
|---|---|
| TK1151 ID | TkA08G228650 |
| OH-1004 ID | LXL04_033069 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 96.100 |
| Protein coverage (%) | TK1151 92.391 / OH-1004 75.444Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_033069 |
|---|---|
| Location | Chr07:35329475-35332118 (-) |
| Description | Similar to Yrdc: YrdC domain-containing protein, mitochondrial |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0002949 tRNA threonylcarbamoyladenosine modification Biological Process GO:0006450 regulation of translational fidelity Biological Process GO:0008033 tRNA processing Biological Process GO:0051051 negative regulation of transport Biological Process GO:0070900 mitochondrial tRNA modification Biological Process GO:0005737 cytoplasm Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0005886 plasma membrane Cellular Component GO:0016020 membrane Cellular Component GO:0000049 tRNA binding Molecular Function GO:0003725 double-stranded RNA binding Molecular Function |
| KEGG gene cross-reference | bta:512062 hsa:79693 mja:MJ_0062 mmu:230734 rno:319113 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01300.25Sua5_yciO_yrdC140-317 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_033069 | PF01300.25 | Sua5_yciO_yrdC | 140 | 317 | 3.1e-45 | 154.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.