LXL04_031979 | RubberDandelionOmics

Gene overview

LXL04_031979

Reference: OH-1004 Chr: Chr07 Coordinates: 14180312-14183496 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1374 bp · LXL04_031979|LXL04_031979|OH1004|cDNA

aTGGTTCATACACACTTCGTGTGGCCTCACGGAGGCAATCAAGTCTTCCTCTGTGGCGATTTCACTGCGTGGATCAAGTATCAACAGATGGTCACCGTTGAGGGTTCTTCCACGACTTTTATGACGATTTGCGATCTACCACCTGGTTTACACAAGTTCAAATTCTTGGTCGATGGTTTATGGAGGGTCGATGAATTACAACCAATTGCTGAAGATGAGTATGGTGTTAACAATGTCGTTCTTGTGGAACAACCGCAACT...

CDS

Download CDS FASTA

1374 bp · LXL04_031979|LXL04_031979|OH1004|CDS

ATGGTTCATACACACTTCGTGTGGCCTCACGGAGGCAATCAAGTCTTCCTCTGTGGCGATTTCACTGCGTGGATCAAGTATCAACAGATGGTCACCGTTGAGGGTTCTTCCACGACTTTTATGACGATTTGCGATCTACCACCTGGTTTACACAAGTTCAAATTCTTGGTCGATGGTTTATGGAGGGTCGATGAATTACAACCAATTGCTGAAGATGAGTATGGTGTTAACAATGTCGTTCTTGTGGAACAACCGCAACT...

Protein

Download Protein FASTA

457 aa · LXL04_031979|LXL04_031979|OH1004|PROTEIN

MVHTHFVWPHGGNQVFLCGDFTAWIKYQQMVTVEGSSTTFMTICDLPPGLHKFKFLVDGLWRVDELQPIAEDEYGVNNVVLVEQPQLMPQTLLVDDGLPVMDIDGYDDRNHAAGASTSGSIPNEAVVELTNDDIETTRRRLFKHFSSYKAYELIPDSGKVFALDDNMTVEEAFLVMHEEGLIVAPLWDAADLQISGMLTASDFIMILIELQRNRAMGTNNVHQLSTISAWKEGKLQLQRRPLIQVGPDDSLSDVAVRILQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031979`
TK1151 ID	TkA08G139610
OH-1004 ID	LXL04_031979
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031979

Location Chr07:14180312-14183496 (-)

Description Similar to SNF4: Sucrose nonfermenting 4-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09020`	Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031979 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000266 mitochondrial fission Biological Process

GO:0006110 regulation of glycolytic process Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0007165 signal transduction Biological Process

GO:0007283 spermatogenesis Biological Process

GO:0009859 pollen hydration Biological Process

GO:0016559 peroxisome fission Biological Process

GO:0031669 cellular response to nutrient levels Biological Process

GO:0042149 cellular response to glucose starvation Biological Process

GO:0045722 positive regulation of gluconeogenesis Biological Process

GO:0046777 protein autophosphorylation Biological Process

KEGG gene cross-reference

ath:AT1G09020

bta:282324

hsa:5571

mmu:19082

ssc:414426

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.537

Rank 1 · LXL04_031979 · OH-1004

Cytoplasm0.487

Rank 2 · LXL04_031979 · OH-1004

Cell membrane0.085

Rank 3 · LXL04_031979 · OH-1004

Lysosome / Vacuole0.070

Rank 4 · LXL04_031979 · OH-1004

Endoplasmic reticulum0.050

Rank 5 · LXL04_031979 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16561.12AMPK1_CBM3-85 aa

PF00571.34CBS327-374 aa

PF00571.34CBS408-452 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031979	`PF16561.12`	AMPK1_CBM	3	85	5e-23	81.8
LXL04_031979	`PF00571.34`	CBS	327	374	3.5e-24	85.6
LXL04_031979	`PF00571.34`	CBS	408	452	3.5e-24	85.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q944A6`	Arabidopsis thaliana	Sucrose nonfermenting 4-like protein	42.105%	Swiss-Prot	moderate database homology

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