Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1148 bp · LXL04_031357|LXL04_031357|OH1004|cDNA
ATGATGGTGGACGTCCTAGAAGCTTATGCCGCCATCGGTATCCGTACGCGTATCCATAATCCCACTACTCTTCGCTCAGCTCCTTCTTTCAGGCGCACGAAGCTCGTAACCAAACCGAGTGCTGCCCTGACTGCTTCTTCGTCTCAGACAGAAGGTCGAACACTTGGTGGGCTGCTATTGCAACGGAAGCATGTCCCAAACGAAGTAAAACGAGATTATGACAATAATGATAATAACGTTATcatcaagaagaagaaaag...
1134 bp · LXL04_031357|LXL04_031357|OH1004|CDS
ATGATGGTGGACGTCCTAGAAGCTTATGCCGCCATCGGTATCCGTACGCGTATCCATAATCCCACTACTCTTCGCTCAGCTCCTTCTTTCAGGCGCACGAAGCTCGTAACCAAACCGAGTGCTGCCCTGACTGCTTCTTCGTCTCAGACAGAAGGTCGAACACTTGGTGGGCTGCTATTGCAACGGAAGCATGTCCCAAACGAAGTAAAACGAGATTATGACAATAATGATAATAACGTTATCATCAAGAAGAAGAAAAG...
Protein
Download Protein FASTA377 aa · LXL04_031357|LXL04_031357|OH1004|PROTEIN
MMVDVLEAYAAIGIRTRIHNPTTLRSAPSFRRTKLVTKPSAALTASSSQTEGRTLGGLLLQRKHVPNEVKRDYDNNDNNVIIKKKKRVFFLDVNPICYDGSTPSLHSFAHWISLFFSEVSLTDPVIAVMDGEGAHEYRRQMLPSYKAHRRKIAPWVSNSRESANVPVRRSYQLISETLSKCNVPVVKIPAQEADDVVATLVEQVLEMDYRVVIASPDKDFKQLISQDVQLVMPLPELKRWSFYTLNHYIAQYNCHPLSDL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_031357 |
|---|---|
| TK1151 ID | TkA08G102880 |
| OH-1004 ID | LXL04_031357 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 83.200 |
| Protein coverage (%) | TK1151 98.873 / OH-1004 99.469Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_031357 |
|---|---|
| Location | Chr07:4922941-4924411 (-) |
| Description | Similar to aq_1628: 5'-3' exonuclease (Aquifex aeolicus (strain VF5) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006261 DNA-templated DNA replication Biological Process GO:0006302 double-strand break repair Biological Process GO:0033567 DNA replication, Okazaki fragment processing Biological Process GO:0005886 plasma membrane Cellular Component GO:0003677 DNA binding Molecular Function GO:0003887 DNA-directed DNA polymerase activity Molecular Function GO:0008408 3'-5' exonuclease activity Molecular Function GO:0008409 5'-3' exonuclease activity Molecular Function GO:0017108 5'-flap endonuclease activity Molecular Function |
| KEGG gene cross-reference | aae:aq_1628 mbo:BQ2027_MB1655 mle:ML1381 mtc:MT1665 mtu:Rv1629 mtv:RVBD_1629 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02739.235_3_exonuc_N103-237 aaPF01367.265_3_exonuc264-353 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_031357 | PF02739.23 | 5_3_exonuc_N | 103 | 237 | 6.4e-22 | 78.7 |
| LXL04_031357 | PF01367.26 | 5_3_exonuc | 264 | 353 | 7.9e-14 | 52.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.