LXL04_031159 | RubberDandelionOmics

Gene overview

LXL04_031159

Reference: OH-1004 Chr: Chr07 Coordinates: 1413644-1415918 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2082 bp · LXL04_031159|LXL04_031159|OH1004|cDNA

ATGCTTCAGATTTTGATAATTGGGTTCGTGACTGGTACCCAACGTAACCGCATATGTTCCAACAAATGTGGAAATGTTCCCATACCTTACCCTTTCGGAATTGAAGAAGGCTGCTACCTAGACGAGTCTTACTACATAGAATGCAACCCCACTACACAAATTCCACACTTGAACGTTTCTCGCATCTTTCCGCAACCTTTTGAATTCCTCTCTCATCCTCTAGAAGTTCTTGAGATAGATATAAACGGCAACCTTAGAGT...

CDS

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2082 bp · LXL04_031159|LXL04_031159|OH1004|CDS

ATGCTTCAGATTTTGATAATTGGGTTCGTGACTGGTACCCAACGTAACCGCATATGTTCCAACAAATGTGGAAATGTTCCCATACCTTACCCTTTCGGAATTGAAGAAGGCTGCTACCTAGACGAGTCTTACTACATAGAATGCAACCCCACTACACAAATTCCACACTTGAACGTTTCTCGCATCTTTCCGCAACCTTTTGAATTCCTCTCTCATCCTCTAGAAGTTCTTGAGATAGATATAAACGGCAACCTTAGAGT...

Protein

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693 aa · LXL04_031159|LXL04_031159|OH1004|PROTEIN

MLQILIIGFVTGTQRNRICSNKCGNVPIPYPFGIEEGCYLDESYYIECNPTTQIPHLNVSRIFPQPFEFLSHPLEVLEIDINGNLRVNLPIVYRCYSKSGETISGPTTEISTSRFPISSTENRFMGVGCDVEANIGVHNPTMVTKCLLDCNYFHGAIKNGSCMGRGCCQASIPPGTTYAGIYISLPENKTTVWNETRCGYAFIVEKDEYKFDNSELRTMPNNVSFPVSLDWSVGSTRCEVAQMDKVNYMCHENSVCYHGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_031159`
TK1151 ID	TkA08G090230
OH-1004 ID	LXL04_031159
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_031159

Location Chr07:1413644-1415918 (-)

Description Similar to WAK3: Wall-associated receptor kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g21240`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g21270`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g21230`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	No verified direct reference in this release
`At1g21210`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	Antisense expression of a cell wall-associated protein kinase, WAK4, inhibits cell elongation and alters morphology.2001 · DOI: 10.1105/tpc.13.6.1317
`At1g21250`	Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.	Oxygen-evolving enhancer protein 2 is phosphorylated by glycine-rich protein 3/wall-associated kinase 1 in Arabidopsis.2003 · DOI: 10.1016/s0006-291x(03)00851-9 Aluminum-induced gene expression and protein localization of a cell wall-associated receptor kinase in Arabidopsis.2003 · DOI: 10.1104/pp.103.022129

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_031159 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007166 cell surface receptor signaling pathway Biological Process

GO:0009311 oligosaccharide metabolic process Biological Process

GO:0009615 response to virus Biological Process

GO:0009751 response to salicylic acid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0009992 intracellular water homeostasis Biological Process

GO:0048527 lateral root development Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G21210

ath:AT1G21230

ath:AT1G21240

ath:AT1G21250

ath:AT1G21270

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.880

Rank 1 · LXL04_031159 · OH-1004

Cytoplasm0.082

Rank 2 · LXL04_031159 · OH-1004

Endoplasmic reticulum0.068

Rank 3 · LXL04_031159 · OH-1004

Nucleus0.042

Rank 4 · LXL04_031159 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_031159 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13947.12GUB_WAK_bind19-58 aa

PF07645.22EGF_CA286-328 aa

PF00069.32Pkinase414-676 aa

PF07714.24PK_Tyr_Ser-Thr416-678 aa

PF03109.23ABC1481-557 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_031159	`PF13947.12`	GUB_WAK_bind	19	58	1.3e-07	32.6
LXL04_031159	`PF07645.22`	EGF_CA	286	328	1.4e-06	29.2
LXL04_031159	`PF00069.32`	Pkinase	414	676	1.3e-52	179.5
LXL04_031159	`PF07714.24`	PK_Tyr_Ser-Thr	416	678	5e-49	167.6
LXL04_031159	`PF03109.23`	ABC1	481	557	8.2e-06	25.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMN8`	Arabidopsis thaliana	Wall-associated receptor kinase 3	39.447%	Swiss-Prot	moderate database homology
`Q9LMP1`	Arabidopsis thaliana	Wall-associated receptor kinase 2	38.743%	Swiss-Prot	moderate database homology
`Q9LMN7`	Arabidopsis thaliana	Wall-associated receptor kinase 5	39.359%	Swiss-Prot	moderate database homology
`Q9LMN6`	Arabidopsis thaliana	Wall-associated receptor kinase 4	37.573%	Swiss-Prot	moderate database homology
`Q39191`	Arabidopsis thaliana	Wall-associated receptor kinase 1	37.865%	Swiss-Prot	moderate database homology

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